Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq530 141 1e-28
>seq530
Length=496674
Score = 141 bits (156), Expect = 1e-28
Identities = 163/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | |||| ||||||||| || ||||| || | ||||| || |
Sbjct 171264 ACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCC 171205
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || | |||||| || ||||| ||||| ||||| ||||| | || | | ||||||
Sbjct 171204 GTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTT 171145
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGA 42171
||| ||| || |||| ||| | || |||||||| |||||||| |||| |||||
Sbjct 171144 GTCTTGGATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGA 171086
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| ||||| || || ||||| || |||||||||||
Sbjct 171085 TGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | || |||||| || || ||||| || | || || || |
Sbjct 171492 ACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCC 171433
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || ||||||||||||||||| ||||| ||||||||||| | || | | ||||||
Sbjct 171432 GTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTT 171373
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || || | | | | ||||||||| || || || || | || ||
Sbjct 171372 GTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAAT 171313
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || || || ||||| |||||||| |||||
Sbjct 171312 GGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543209085782480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |