Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq88 259 5e-64 >seq88 Length=290544 Score = 259 bits (286), Expect = 5e-64 Identities = 609/917 (66%), Gaps = 2/917 (0%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||||| ||||| || || || || || |||||| || | ||| Sbjct 180686 AACTACCAGTTCTTTGGTTTCAAGACACTCGAACGTTCATATCTCCTCCGCATAAACGGC 180627 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| ||||||| || || || |||| ||||| || || | || ||||||||| | Sbjct 180626 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGAT 180567 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| ||| | | | | | | ||||| | ||| | || ||| Sbjct 180566 GACATCGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 180507 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | ||||| ||||||||||||| || || ||||| ||||| || || ||||| || Sbjct 180506 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATC 180447 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| |||| ||| |||| ||||| |||||| ||||||| || Sbjct 180446 GAC-ATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGAT 180388 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || ||| || || || || ||| || ||| | | ||||| | || || || Sbjct 180387 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 180328 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| | || || || || || || || || ||| | || |||||||| || | |||||| Sbjct 180327 CATCGGTGGCACTAACGGAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAA 180268 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || ||||| || ||||||||||| | | | ||| | ||||| |||| || Sbjct 180267 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCT 180208 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| ||||| | ||| | |||||||| |||||||||||||| || Sbjct 180207 CGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGA 180148 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | || |||||||||||||| ||| | || ||||| || ||||| || Sbjct 180147 GGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCG 180088 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || | | ||| | ||||| || | || || || || || || || || |||| Sbjct 180087 TGTTCAAGACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGA 180028 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || | || || |||| |||| | | ||||| |||| ||||| | Sbjct 180027 TGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAGAAGCAGAACAAGGGTCG 179968 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 || | | || ||||| ||| | ||| | || | |||| ||||| || Sbjct 179967 CGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGG 179908 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 || |||| || | | ||||||| || |||| |||| ||||||| || ||||||| Sbjct 179907 TAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGG 179848 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||| ||||| || |||||||| |||||||| ||||| || |||| || ||| | Sbjct 179847 TACCATCCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGT 179788 Query 94614 TGCTGTGTGTAACCTGG 94630 ||||| || ||| ||| Sbjct 179787 CGCTGTTTGCAACTTGG 179771 Score = 100 bits (110), Expect = 3e-16 Identities = 207/302 (69%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||||| ||| ||||||| | || |||||||| || |||||||| | ||||| Sbjct 179336 CACGGTGTACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATT 179277 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||||||||||||| ||||| || | |||||||||| | || | | || || ||| Sbjct 179276 CTGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTC 179217 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGT 95255 || || || |||| || ||||| | || ||||| || || | ||||| | Sbjct 179216 GCTGGTGAGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGAC-ATGGGTCT 179158 Query 95256 GTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACG--GCTCCG---TCCAGAAC 95310 |||| ||| || | ||||||| | | |||| | | | | || |||| Sbjct 179157 GTGGTCTGAGAACATGAAGAACCGTATCAT---CGCCGATGGAGGTTCGATTGCCAG--G 179103 Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370 || || | || || ||||| | ||| | || ||||||||||| ||||||||| ||||| Sbjct 179102 ATTCCCAACATCCCTGAGGAGACAAAGACCCTTTACAAGACCGTCTGGGAGATCTCGCAG 179043 Query 95371 CG 95372 || Sbjct 179042 CG 179041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494719817330120