Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq88 203 3e-47
seq23 145 8e-30
seq530 116 4e-21
seq38 89.7 5e-13
>seq88
Length=290544
Score = 203 bits (224), Expect = 3e-47
Identities = 973/1531 (64%), Gaps = 43/1531 (3%)
Strand=Plus/Plus
Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068
||||| | || ||| | ||||||| || || ||||| || || | || || | ||
Sbjct 179173 AGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAA 179232
Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128
|| | ||| ||| | || || ||| | ||||| ||||| || || || | ||||
Sbjct 179233 TAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAG 179292
Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCC 153188
|| || |||||| || | | || || || || | |||||| | ||| | |||
Sbjct 179293 GCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCC 179352
Query 153189 TTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA-- 153246
|||| | | ||| ||||| || | | ||||| | |||||||| |||||||| |
Sbjct 179353 TTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGG 179412
Query 153247 ACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCC--GTCGCGTTGGGC 153304
| || ||| | | ||||| || | | || |||| || || | ||| |
Sbjct 179413 ATAC-CCTGGGATA-CGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCG- 179469
Query 153305 CAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAG 153364
| ||||| | ||| || ||| ||| ||||| ||| |||||| | |||||
Sbjct 179470 -ATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAG 179528
Query 153365 AACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACC 153424
||||| || |||| | || | ||| || | ||||| ||||| |||||
Sbjct 179529 CTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACC 179588
Query 153425 CTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTATGG 153483
|| | ||| | ||||||||||| || ||||||||| | || ||| | | |
Sbjct 179589 TTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAG 179647
Query 153484 GATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCT 153543
| ||||| ||| ||||| || ||||| | |||||| || || | || | | |
Sbjct 179648 GGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGT 179707
Query 153544 TAAGTTTCTCGAAATCATA------GGTCATTTCGTCGACGCGTACGCATCGATTCACGG 153597
|| |||| ||| ||| | || | | | |||||| | | || ||
Sbjct 179708 GGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAA------AAGAAGGCAGGG 179761
Query 153598 CAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGG 153657
||| ||| |||| || || || || ||| || | || |||||| ||| ||||| |
Sbjct 179762 CAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAG 179821
Query 153658 CGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACG 153717
||| |||||| || ||| || | || | ||| ||||| ||||| ||||| |
Sbjct 179822 TGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAG 179881
Query 153718 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA---ACC 153774
|||| ||| ||||||| | || || |||||| || | || | ||| |||
Sbjct 179882 CGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACC 179941
Query 153775 TATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGT 153834
| || | || || || || || ||| | || ||||||| | |||||
Sbjct 179942 AAAGC---TTTTGTGCGCGAACAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGT 179998
Query 153835 ACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACA 153894
|||| || || || || |||||| ||||||||||| || |||| | ||| ||||
Sbjct 179999 ACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACA 180058
Query 153895 TCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCG 153954
|||| | ||| | ||| | | | || || |||||| || || || | ||| || |
Sbjct 180059 TCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAG 180118
Query 153955 CGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCC---CATGTTGCGTTTCAGATTGA 154011
|||| | ||| ||||| || | |||||| ||| | ||||| ||| | |
Sbjct 180119 CGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAA 180175
Query 154012 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC- 154070
| | || | ||| ||| |||||||| || || | ||||| ||| | ||||||| ||||
Sbjct 180176 GGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCT 180235
Query 154071 --TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCA 154128
|| || ||||| ||||| | ||| | | |||||| | || || | |||||| |
Sbjct 180236 TGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGA 180295
Query 154129 GGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCA 154188
| || | | || ||||| || | ||| | ||| || || | | ||||
Sbjct 180296 GACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCA 180355
Query 154189 CGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCC--CAGCGTCCT 154246
|||| | |||||| ||||| || ||| || || || |||| | | || ||
Sbjct 180356 CGTTGAGGCCAATACCGCCAGCGGTCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTC 180413
Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306
||| |||||||||||||| || || | | ||| | ||| || || ||||||| ||
Sbjct 180414 GTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGG 180473
Query 154307 -AATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365
||| | || ||||| || | || || ||||| || || ||||| ||
Sbjct 180474 TGATG-GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACA 180532
Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425
| | ||| || |||||||| | ||||| ||||||||||||||||| | || || |
Sbjct 180533 TGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACAC 180592
Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCAT 154485
||||||||||||| || || || |||||||| | || || | ||||||| |
Sbjct 180593 GCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAAC 180652
Query 154486 TTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516
|||||| || ||| |||| || ||| |||
Sbjct 180653 GTTCGAGTGTCTTGAAACCAAAGAACTGGTA 180683
>seq23
Length=86929
Score = 145 bits (160), Expect = 8e-30
Identities = 504/764 (66%), Gaps = 27/764 (4%)
Strand=Plus/Minus
Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145
|||||||||||||||| || ||| ||||| | || |||||||| ||| ||||| ||
Sbjct 35240 AACGATGACGAGCGCTTCTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGATGGC 35181
Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGC---AGCGGAACGTTCCGGAACTCGAGGCG 52202
|| || ||| ||||| | ||| || | |||| | || | | ||||||
Sbjct 35180 ATTGTCAACGAGAACCTTGTTGAGCG-ATTCTCTAGCGAA--GTACAAATCCCCGAGGCA 35124
Query 52203 CAATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTG 52262
| || ||| || ||| ||| | | || ||| ||| ||| | |||| ||| ||||
Sbjct 35123 CGATGCTTCTACGGTTTCCAAATCATGATGGAGAACGTTCACTCAGAGACCTACTCTCTG 35064
Query 52263 CTCATTGAGCAGCTGATAAAAGATGAGCACGAGC-GCGACACG---CTGCTGAATGCGTT 52318
||||| || || | | | || |||| | ||| ||| || | || | || || |
Sbjct 35063 CTCATCGA-CACAT-ACATTAGC-GAGCCCAAGCAGCG-CAGGTACCTCTTCAACGCCAT 35008
Query 52319 CGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGA 52378
||| || | || ||| | ||||| ||||| | ||||| || |||||| | |
Sbjct 35007 CGACAACATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAA 34948
Query 52379 CACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC 52438
| | |||| | ||| | ||| | || || |||||| || ||||| | || ||
Sbjct 34947 GAACTCCACATTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAG 34888
Query 52439 CGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTT 52498
||| || ||| ||||||| | | || | | || | |||||||| || || ||
Sbjct 34887 CGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATT 34828
Query 52499 CAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTA 52558
| ||||||| | || || || ||||| || ||||||| ||||| || ||||| ||
Sbjct 34827 CTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTT 34768
Query 52559 CAAGACGCGCGT-GACCGAAAAATTGGATTCG-GACACGATCCTGAGC-ATGTTCAAGGA 52615
| | | | | || ||| || | | || | || |||| || ||| ||
Sbjct 34767 CT---CTCTCCTCGA--GAACAAGCCCAGCCCAGAGTCTGTCA-GAGCTATCATCACTGA 34714
Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675
|| || | || || ||||||| || | | ||| || || || ||||| |||||
Sbjct 34713 AGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCAT 34654
Query 52676 GAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734
|||||| | || ||||||| | ||||||||||| || || || |||||| || || |
Sbjct 34653 GAACGCT-ACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCC 34595
Query 52735 TCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793
|||| | | ||| || || | |||| ||| || || || || ||| | ||||||||
Sbjct 34594 TCGGCAACGTCAAGGT-CTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCT 34536
Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| | || ||||||||||| ||||||||||| |||||||| ||
Sbjct 34535 CTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 34492
>seq530
Length=496674
Score = 116 bits (128), Expect = 4e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| |||||||||||| | |||||| ||| || | || || ||||
Sbjct 171242 GACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCG 171183
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||||||||||||||| ||||| || ||||| ||| || || |
Sbjct 171182 AAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTGACG 171123
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | || |||||||||| ||| | || || |||||||| || ||
Sbjct 171122 TTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTG 171063
Query 138601 ACAAAAATCTGCAT 138614
|| || || |||||
Sbjct 171062 ACGAAGATTTGCAT 171049
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || || || | | |||||||| || |||||||||||
Sbjct 171503 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 171444
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||| || || || ||||| | |||| |||||||| ||||| |||||
Sbjct 171443 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 171384
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || |||| |||| || | |||||| | ||||| ||
Sbjct 171383 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTG-TCGATCGTGTCGCTAGACTCGAC 171325
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || || ||||| || ||||| ||||||||
Sbjct 171324 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277
Score = 89.7 bits (98), Expect = 5e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| || || || |||||||||||| || ||||
Sbjct 171014 GACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCG 170955
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || || || || |||||||| || || || ||||| ||| ||| || |
Sbjct 170954 AAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACG 170895
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592
| || | |||||||| ||||| ||||| | || | || || || ||||
Sbjct 170894 TTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 170843
>seq38
Length=207270
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || || || | | |||||||||| || |||||||||||| |
Sbjct 118463 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 118522
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||||||||| || |||| |||| || |||||||||||||| ||
Sbjct 118523 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 118582
Query 138508 ATACCTTCTTTGTC 138521
|| || || |||||
Sbjct 118583 ATGCCCTCCTTGTC 118596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496259006805840
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