Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq88 203 3e-47 seq23 145 8e-30 seq530 116 4e-21 seq38 89.7 5e-13 >seq88 Length=290544 Score = 203 bits (224), Expect = 3e-47 Identities = 973/1531 (64%), Gaps = 43/1531 (3%) Strand=Plus/Plus Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068 ||||| | || ||| | ||||||| || || ||||| || || | || || | || Sbjct 179173 AGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAA 179232 Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128 || | ||| ||| | || || ||| | ||||| ||||| || || || | |||| Sbjct 179233 TAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAG 179292 Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCC 153188 || || |||||| || | | || || || || | |||||| | ||| | ||| Sbjct 179293 GCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCC 179352 Query 153189 TTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA-- 153246 |||| | | ||| ||||| || | | ||||| | |||||||| |||||||| | Sbjct 179353 TTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGG 179412 Query 153247 ACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCC--GTCGCGTTGGGC 153304 | || ||| | | ||||| || | | || |||| || || | ||| | Sbjct 179413 ATAC-CCTGGGATA-CGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCG- 179469 Query 153305 CAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAG 153364 | ||||| | ||| || ||| ||| ||||| ||| |||||| | ||||| Sbjct 179470 -ATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAG 179528 Query 153365 AACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACC 153424 ||||| || |||| | || | ||| || | ||||| ||||| ||||| Sbjct 179529 CTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACC 179588 Query 153425 CTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTATGG 153483 || | ||| | ||||||||||| || ||||||||| | || ||| | | | Sbjct 179589 TTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAG 179647 Query 153484 GATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCT 153543 | ||||| ||| ||||| || ||||| | |||||| || || | || | | | Sbjct 179648 GGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGT 179707 Query 153544 TAAGTTTCTCGAAATCATA------GGTCATTTCGTCGACGCGTACGCATCGATTCACGG 153597 || |||| ||| ||| | || | | | |||||| | | || || Sbjct 179708 GGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAA------AAGAAGGCAGGG 179761 Query 153598 CAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGG 153657 ||| ||| |||| || || || || ||| || | || |||||| ||| ||||| | Sbjct 179762 CAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAG 179821 Query 153658 CGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACG 153717 ||| |||||| || ||| || | || | ||| ||||| ||||| ||||| | Sbjct 179822 TGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAG 179881 Query 153718 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA---ACC 153774 |||| ||| ||||||| | || || |||||| || | || | ||| ||| Sbjct 179882 CGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACC 179941 Query 153775 TATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGT 153834 | || | || || || || || ||| | || ||||||| | ||||| Sbjct 179942 AAAGC---TTTTGTGCGCGAACAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGT 179998 Query 153835 ACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACA 153894 |||| || || || || |||||| ||||||||||| || |||| | ||| |||| Sbjct 179999 ACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACA 180058 Query 153895 TCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCG 153954 |||| | ||| | ||| | | | || || |||||| || || || | ||| || | Sbjct 180059 TCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAG 180118 Query 153955 CGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCC---CATGTTGCGTTTCAGATTGA 154011 |||| | ||| ||||| || | |||||| ||| | ||||| ||| | | Sbjct 180119 CGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAA 180175 Query 154012 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC- 154070 | | || | ||| ||| |||||||| || || | ||||| ||| | ||||||| |||| Sbjct 180176 GGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCT 180235 Query 154071 --TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCA 154128 || || ||||| ||||| | ||| | | |||||| | || || | |||||| | Sbjct 180236 TGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGA 180295 Query 154129 GGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCA 154188 | || | | || ||||| || | ||| | ||| || || | | |||| Sbjct 180296 GACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCA 180355 Query 154189 CGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCC--CAGCGTCCT 154246 |||| | |||||| ||||| || ||| || || || |||| | | || || Sbjct 180356 CGTTGAGGCCAATACCGCCAGCGGTCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTC 180413 Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306 ||| |||||||||||||| || || | | ||| | ||| || || ||||||| || Sbjct 180414 GTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGG 180473 Query 154307 -AATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365 ||| | || ||||| || | || || ||||| || || ||||| || Sbjct 180474 TGATG-GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACA 180532 Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425 | | ||| || |||||||| | ||||| ||||||||||||||||| | || || | Sbjct 180533 TGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACAC 180592 Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCAT 154485 ||||||||||||| || || || |||||||| | || || | ||||||| | Sbjct 180593 GCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAAC 180652 Query 154486 TTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 |||||| || ||| |||| || ||| ||| Sbjct 180653 GTTCGAGTGTCTTGAAACCAAAGAACTGGTA 180683 >seq23 Length=86929 Score = 145 bits (160), Expect = 8e-30 Identities = 504/764 (66%), Gaps = 27/764 (4%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||||||| || ||| ||||| | || |||||||| ||| ||||| || Sbjct 35240 AACGATGACGAGCGCTTCTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGATGGC 35181 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGC---AGCGGAACGTTCCGGAACTCGAGGCG 52202 || || ||| ||||| | ||| || | |||| | || | | |||||| Sbjct 35180 ATTGTCAACGAGAACCTTGTTGAGCG-ATTCTCTAGCGAA--GTACAAATCCCCGAGGCA 35124 Query 52203 CAATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTG 52262 | || ||| || ||| ||| | | || ||| ||| ||| | |||| ||| |||| Sbjct 35123 CGATGCTTCTACGGTTTCCAAATCATGATGGAGAACGTTCACTCAGAGACCTACTCTCTG 35064 Query 52263 CTCATTGAGCAGCTGATAAAAGATGAGCACGAGC-GCGACACG---CTGCTGAATGCGTT 52318 ||||| || || | | | || |||| | ||| ||| || | || | || || | Sbjct 35063 CTCATCGA-CACAT-ACATTAGC-GAGCCCAAGCAGCG-CAGGTACCTCTTCAACGCCAT 35008 Query 52319 CGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGA 52378 ||| || | || ||| | ||||| ||||| | ||||| || |||||| | | Sbjct 35007 CGACAACATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAA 34948 Query 52379 CACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC 52438 | | |||| | ||| | ||| | || || |||||| || ||||| | || || Sbjct 34947 GAACTCCACATTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAG 34888 Query 52439 CGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTT 52498 ||| || ||| ||||||| | | || | | || | |||||||| || || || Sbjct 34887 CGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATT 34828 Query 52499 CAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTA 52558 | ||||||| | || || || ||||| || ||||||| ||||| || ||||| || Sbjct 34827 CTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTT 34768 Query 52559 CAAGACGCGCGT-GACCGAAAAATTGGATTCG-GACACGATCCTGAGC-ATGTTCAAGGA 52615 | | | | | || ||| || | | || | || |||| || ||| || Sbjct 34767 CT---CTCTCCTCGA--GAACAAGCCCAGCCCAGAGTCTGTCA-GAGCTATCATCACTGA 34714 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 || || | || || ||||||| || | | ||| || || || ||||| ||||| Sbjct 34713 AGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCAT 34654 Query 52676 GAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734 |||||| | || ||||||| | ||||||||||| || || || |||||| || || | Sbjct 34653 GAACGCT-ACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCC 34595 Query 52735 TCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793 |||| | | ||| || || | |||| ||| || || || || ||| | |||||||| Sbjct 34594 TCGGCAACGTCAAGGT-CTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCT 34536 Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | || ||||||||||| ||||||||||| |||||||| || Sbjct 34535 CTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 34492 >seq530 Length=496674 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| | |||||| ||| || | || || |||| Sbjct 171242 GACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCG 171183 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||||||||||||||| ||||| || ||||| ||| || || | Sbjct 171182 AAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTGACG 171123 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | || |||||||||| ||| | || || |||||||| || || Sbjct 171122 TTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTG 171063 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 171062 ACGAAGATTTGCAT 171049 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | |||||||| || ||||||||||| Sbjct 171503 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 171444 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || ||||| | |||| |||||||| ||||| ||||| Sbjct 171443 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 171384 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || |||| |||| || | |||||| | ||||| || Sbjct 171383 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTG-TCGATCGTGTCGCTAGACTCGAC 171325 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || ||||| || ||||| |||||||| Sbjct 171324 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277 Score = 89.7 bits (98), Expect = 5e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || || || |||||||||||| || |||| Sbjct 171014 GACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCG 170955 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || || || |||||||| || || || ||||| ||| ||| || | Sbjct 170954 AAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACG 170895 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 | || | |||||||| ||||| ||||| | || | || || || |||| Sbjct 170894 TTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 170843 >seq38 Length=207270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | |||||||||| || |||||||||||| | Sbjct 118463 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 118522 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||||| || |||| |||| || |||||||||||||| || Sbjct 118523 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 118582 Query 138508 ATACCTTCTTTGTC 138521 || || || ||||| Sbjct 118583 ATGCCCTCCTTGTC 118596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259006805840