Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq23 120 3e-22 seq530 109 5e-19 seq88 91.5 1e-13 seq38 82.4 7e-11 >seq23 Length=86929 Score = 120 bits (132), Expect = 3e-22 Identities = 250/368 (68%), Gaps = 27/368 (7%) Strand=Plus/Minus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 |||||||| || || || ||||||||| ||||| | ||||| ||| |||||||| || Sbjct 34844 ATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACCGAC 34785 Query 47283 TTTGCCTG---TCTCTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCA----C 47335 || ||||| ||||| || | || ||| | ||| | | ||||| | Sbjct 34784 TTCGCCTGCCTTCTCTTCTCTCTC-CTCGAG---AACAA------GCCCAGCCCAGAGTC 34735 Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395 ||||| | || | | |||||||||| |||||| |||||| || ||| || || Sbjct 34734 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 34675 Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGC 47455 || || | | || |||||||| | ||| | | |||||||| || ||||| Sbjct 34674 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 34615 Query 47456 CGACCGCCTGCTCGT-----TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCA 47510 ||||| ||||| | || || || || |||| | |||||| || || || Sbjct 34614 TGACCGTCTGCTGTTGGCCCTCGGC-AACGT----CAAGGTCTACCACGCCACCAACCCC 34560 Query 47511 TTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 ||||| || ||| | |||||||| || | || ||||||||||| ||||||||||||||| Sbjct 34559 TTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTC 34500 Query 47571 GGCGAATA 47578 ||||| || Sbjct 34499 GGCGACTA 34492 >seq530 Length=496674 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || | |||||| || | |||||||| || || || ||||| || Sbjct 171504 TCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 171445 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| || || || ||||| || |||||| |||| | |||||||| || ||||| Sbjct 171444 GAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 171385 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | | |||| ||||| || |||||| Sbjct 171384 GATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGAC 171325 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || ||||| ||||| || ||||| |||||||| Sbjct 171324 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || || ||||| ||| || |||||| ||| || ||||| || || Sbjct 170736 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCG 170677 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 170676 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 170617 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | |||| ||||| | | ||| || |||| ||| | || || ||||| Sbjct 170616 ACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 170564 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| ||| || ||||| || || || || ||||| Sbjct 171017 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 170958 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || |||||||| ||||| |||||||||||||| ||| || |||| Sbjct 170957 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 170898 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | |||| |||| |||||| | ||| || || | || | || |||||||||| Sbjct 170897 ACGTTG-TCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 170843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| ||||| || ||||| ||| Sbjct 171275 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 171216 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||| ||||| ||| |||| | ||||| || || ||||| Sbjct 171215 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 171156 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| ||| ||||| |||| || | ||||| | || || Sbjct 171155 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTG-TCAATAGTGTCGCTTGATTCCAC 171097 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| ||||| || || || || || ||||| Sbjct 171096 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049 >seq88 Length=290544 Score = 91.5 bits (100), Expect = 1e-13 Identities = 199/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 147273 GTAGATGCCGTCGATGCTGTCTTCCTTGATG-CATTGCAGGAAACACGAACACATTTGGG 147331 ||| ||||||||||||||||| ||||| ||| | || ||||| || || ||||||| | Sbjct 180414 GTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATG-AGGAAGCATGACGACATTTGTG 180472 Query 147332 GACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCA-GACTC 147390 | |||||||| |||| ||| || |||||| ||||| || | || | Sbjct 180473 GTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGAC 180531 Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450 || | | || || || ||||| || | |||||||||||||||| | | || || Sbjct 180532 ATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACA 180591 Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCA 147510 |||||||||||||| || || || || || | | | | || | | |||||| | Sbjct 180592 CGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATAT-GA 180650 Query 147511 TTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559 | || || || |||||||||||| ||| ||||| | |||| | || || Sbjct 180651 ACGTTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGT 180700 >seq38 Length=207270 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/157 (72%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 118463 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 118522 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || ||||| ||| |||||| ||||| || || || || Sbjct 118523 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 118582 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGT 127042 ||||||||||||||| ||| || ||||| ||||| Sbjct 118583 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 118619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497548763280