Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq88 232 8e-56 seq23 86.0 8e-12 >seq88 Length=290544 Score = 232 bits (256), Expect = 8e-56 Identities = 1109/1743 (64%), Gaps = 41/1743 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||| |||||||| || |||||||| || ||||||| || | ||||| || | Sbjct 178888 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTG 178947 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | || || | |||| || ||| | || || || || ||||| Sbjct 178948 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAA 179007 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTTC 115735 || || || || ||||| ||||| | |||||| | ||| ||||| || || Sbjct 179008 GCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTCT 179065 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG--ATAGAGCCACCTGC 115793 |||| ||| |||| | || || ||||| | || || ||| || || |||| | Sbjct 179066 TGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGG-GA-ATCCTGGCAATCGA---ACCTCC 179120 Query 115794 CTTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCT- 115849 | | | |||| | | |||||| | || ||||| ||||| || | || |||| Sbjct 179121 ATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTT 179180 Query 115850 ---CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGA 115906 | || | | | |||||||| |||||||| |||||| || | ||||| Sbjct 179181 GAGCAACCATGGG----TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGA 179236 Query 115907 TGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTG 115966 |||||| ||||||||||| |||||||| ||||| |||| || || | |||||||| | Sbjct 179237 TGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAG 179296 Query 115967 TGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGA 116026 | ||||||||||| ||||| || |||||| | ||| | | ||| ||||| | Sbjct 179297 TTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCA 179356 Query 116027 GGGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGAT 116084 | | |||||| | || | || | || | | | ||||||||| |||||||||| Sbjct 179357 GAGACGCCCAGTCCCAGAGGTCAG-TAGGTGT-GACATTCCACATATCGTACTGGAGGAT 179414 Query 116085 ACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC 116144 ||| ||||| | || ||||| || | |||| || || || ||| || | || Sbjct 179415 ACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTC 179474 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 | | | ||| || || || || || ||||| || || | || | ||| Sbjct 179475 GCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTT 179534 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGAC 116264 || ||||| || || || | || ||| | || |||| || |||||||| || Sbjct 179535 AGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAAC 179594 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAA 116324 ||| | || || || || || | | || || || || || || || Sbjct 179595 ACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTG 179654 Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 116384 || ||||| | | | || | || |||||| |||| ||||| ||| || ||||| Sbjct 179655 GTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTT 179714 Query 116385 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444 | | | ||||| || | || | | |||| | ||| ||||| | || |||| Sbjct 179715 CTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAA 179774 Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504 || || |||| | |||||| | | |||||||| | ||| || || |||| || || Sbjct 179775 GTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGA 179834 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564 || ||||| || | |||||| || || ||| ||| || || ||||||||||| Sbjct 179835 GCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAG 179894 Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGC 116624 |||| | || | || ||||| || || | || || || || | ||| | | || Sbjct 179895 CATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGC 179954 Query 116625 TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTC 116684 | ||||| || | || || |||||| | ||| || || || || || Sbjct 179955 GCGAACAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTC 180014 Query 116685 TTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACC 116744 |||||| | || | ||| || || || | || || | || | ||| | || Sbjct 180015 TTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCC 180074 Query 116745 ACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804 || | ||| ||||||||||||||||| || ||||| || || |||||||||| || Sbjct 180075 GTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCG 180134 Query 116805 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864 | ||| | || || | || || || |||| || | ||| | | || || || Sbjct 180135 AGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGC 180194 Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTT 116918 |||||| || || ||||| | |||| | | ||| |||| ||| |||||| Sbjct 180195 GTGCCATGGCTCGAGGTAGATGGCGA-AGGCACCT--GGACGCTTGTTGCCACCCTGGTC 180251 Query 116919 TACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCC 116978 ||||| | || || ||| |||| || ||||| ||||||| ||||| |||| || Sbjct 180252 GACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCC 180311 Query 116979 ATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATA 117036 || || || |||| || ||| | | || | | ||| | || | |||||| Sbjct 180312 GTTAGTGCCACCGATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATA 180369 Query 117037 CCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 117096 || || || ||| ||||| || || | |||| || |||| || || ||||| Sbjct 180370 CCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATG 180429 Query 117097 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCG 117156 ||| |||| | ||||||||||||| |||||||||||| |||||| || ||| Sbjct 180430 CTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCG 180489 Query 117157 TTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTC 117215 ||||| | || || | ||||| |||| ||| ||| ||||| | ||||||||||| Sbjct 180490 TTGAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTC 180548 Query 117216 CAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTG 117275 | | | ||||| || |||||||| || | | || ||||| | ||||| ||| Sbjct 180549 GATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 180608 Query 117276 GGG 117278 || Sbjct 180609 TGG 180611 >seq23 Length=86929 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||||||||| |||||||| || || ||||| ||||| ||||| ||||| |||||| Sbjct 34798 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 34857 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || || ||||||||| ||||| ||| ||||| Sbjct 34858 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 34917 Query 127658 GCAAATAGACGCTCGGCAAA 127677 |||| || || | ||| || Sbjct 34918 GCAACGAGGCGGTTGGCGAA 34937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503005144520