Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq88 125 1e-23 >seq88 Length=290544 Score = 125 bits (138), Expect = 1e-23 Identities = 330/497 (66%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 ||||| || || ||||| ||||||| | ||||| | || | | |||||||||||| Sbjct 178843 TCTTGGTCGACAGTGAATTGAATGGGAGCCGAGGCAGCCATGGTACGGAGATAGTACATG 178902 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || || || ||| || | |||||| |||| | |||| || | Sbjct 178903 CCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTGATCTTGCCCATAGTA 178962 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || || |||||| ||||| || ||||| ||||| ||||||| | || || ||| Sbjct 178963 GGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCG 179022 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG-AACACGTCTCTGGT 204075 ||||| | || || | |||||| |||||||| || |||||| || |||| | || Sbjct 179023 GCCATCTCAATGATCCTTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCT-TTGT 179081 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG---ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 | | ||| || || | ||||| ||||| || ||||| || | | | Sbjct 179082 CTCCTCAGG--GATGTTGGGA-ATCCTGGCAATCGAACCTCCATCGGCGATGATACGGTT 179138 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | || | | ||| ||||| |||| || || ||| | || ||||||| Sbjct 179139 CTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTGAC 179198 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 | ||| || || || | || || | |||| | | |||| |||| |||| ||||| Sbjct 179199 AACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAA 179258 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 |||||||||||| | |||||| | ||| ||| || |||||||| || | |||||| Sbjct 179259 GCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAG 179318 Query 204313 GGAGTTGCGCACACCGT 204329 |||||||| ||||||| Sbjct 179319 CGAGTTGCGTACACCGT 179335 Score = 87.8 bits (96), Expect = 3e-12 Identities = 403/627 (64%), Gaps = 12/627 (2%) Strand=Plus/Plus Query 205072 GTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACA 205131 |||||| || | || || |||||| || || || || || || | || || || Sbjct 179997 GTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCA 180056 Query 205132 CATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAG 205191 |||||| | ||| | | ||||| || | || ||| || ||||| |||||||| Sbjct 180057 CATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAG 180116 Query 205192 GCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAG 205251 |||| || ||||| || || | | | || | || ||||||| || ||| || Sbjct 180117 AGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAG 180176 Query 205252 CCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCT 205310 ||||| | | ||| |||||||| ||||| | | | ||| | || ||||| | || Sbjct 180177 G-AAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCT 180235 Query 205311 TGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCA 205370 |||| ||||||||||| || ||||| | |||| | || || ||||| || | | Sbjct 180236 TGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGA 180295 Query 205371 GACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCA--CGTTGGA 205428 |||| || | || ||||| |||| |||| ||||| ||| | | || || | Sbjct 180296 GACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCA 180355 Query 205429 GATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-CTCTTGCAGAGTGC 205487 | | |||||| ||||||| ||||| |||| || || ||||| || ||| Sbjct 180356 CGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTG-AGTGTGT 180412 Query 205488 TGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCACGAAGCCAGCT-T 205545 ||| ||||| ||||| || ||| || |||| | || |||| || | || | | Sbjct 180413 CGTAAATGCCGTCGATGCTGTCCTCCTTCA-TGTCGATGAGGAAGCATGACGACATTTGT 180471 Query 205546 GGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCT 205605 || | | | |||||||||| ||| | ||| || |||||| ||||| ||| | Sbjct 180472 GGTGATGGT-GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGA 180530 Query 205606 CAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGCGAT 205665 || | ||||||||| | | |||| | || ||||||||| || | || | Sbjct 180531 CATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAAC 180590 Query 205666 CCTCATGAAGAGGTGTTGAGGTCTCTC 205692 | ||||| | |||||| || | ||| Sbjct 180591 ACGCATGAGCATGTGTTGTGGGCGCTC 180617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795149763126320