Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq88 125 1e-23
>seq88
Length=290544
Score = 125 bits (138), Expect = 1e-23
Identities = 330/497 (66%), Gaps = 9/497 (2%)
Strand=Plus/Plus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896
||||| || || ||||| ||||||| | ||||| | || | | ||||||||||||
Sbjct 178843 TCTTGGTCGACAGTGAATTGAATGGGAGCCGAGGCAGCCATGGTACGGAGATAGTACATG 178902
Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
|| ||||| || || || ||| || | |||||| |||| | |||| || |
Sbjct 178903 CCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTGATCTTGCCCATAGTA 178962
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016
|| || |||||| ||||| || ||||| ||||| ||||||| | || || |||
Sbjct 178963 GGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCG 179022
Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG-AACACGTCTCTGGT 204075
||||| | || || | |||||| |||||||| || |||||| || |||| | ||
Sbjct 179023 GCCATCTCAATGATCCTTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCT-TTGT 179081
Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG---ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132
| | ||| || || | ||||| ||||| || ||||| || | | |
Sbjct 179082 CTCCTCAGG--GATGTTGGGA-ATCCTGGCAATCGAACCTCCATCGGCGATGATACGGTT 179138
Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192
| || | | ||| ||||| |||| || || ||| | || |||||||
Sbjct 179139 CTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTGAC 179198
Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252
| ||| || || || | || || | |||| | | |||| |||| |||| |||||
Sbjct 179199 AACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAA 179258
Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312
|||||||||||| | |||||| | ||| ||| || |||||||| || | ||||||
Sbjct 179259 GCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAG 179318
Query 204313 GGAGTTGCGCACACCGT 204329
|||||||| |||||||
Sbjct 179319 CGAGTTGCGTACACCGT 179335
Score = 87.8 bits (96), Expect = 3e-12
Identities = 403/627 (64%), Gaps = 12/627 (2%)
Strand=Plus/Plus
Query 205072 GTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACA 205131
|||||| || | || || |||||| || || || || || || | || || ||
Sbjct 179997 GTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCA 180056
Query 205132 CATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAG 205191
|||||| | ||| | | ||||| || | || ||| || ||||| ||||||||
Sbjct 180057 CATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAG 180116
Query 205192 GCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAG 205251
|||| || ||||| || || | | | || | || ||||||| || ||| ||
Sbjct 180117 AGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAG 180176
Query 205252 CCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCT 205310
||||| | | ||| |||||||| ||||| | | | ||| | || ||||| | ||
Sbjct 180177 G-AAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCT 180235
Query 205311 TGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCA 205370
|||| ||||||||||| || ||||| | |||| | || || ||||| || | |
Sbjct 180236 TGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGA 180295
Query 205371 GACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCA--CGTTGGA 205428
|||| || | || ||||| |||| |||| ||||| ||| | | || || |
Sbjct 180296 GACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCA 180355
Query 205429 GATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-CTCTTGCAGAGTGC 205487
| | |||||| ||||||| ||||| |||| || || ||||| || |||
Sbjct 180356 CGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTG-AGTGTGT 180412
Query 205488 TGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCACGAAGCCAGCT-T 205545
||| ||||| ||||| || ||| || |||| | || |||| || | || | |
Sbjct 180413 CGTAAATGCCGTCGATGCTGTCCTCCTTCA-TGTCGATGAGGAAGCATGACGACATTTGT 180471
Query 205546 GGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCT 205605
|| | | | |||||||||| ||| | ||| || |||||| ||||| ||| |
Sbjct 180472 GGTGATGGT-GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGA 180530
Query 205606 CAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGCGAT 205665
|| | ||||||||| | | |||| | || ||||||||| || | || |
Sbjct 180531 CATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAAC 180590
Query 205666 CCTCATGAAGAGGTGTTGAGGTCTCTC 205692
| ||||| | |||||| || | |||
Sbjct 180591 ACGCATGAGCATGTGTTGTGGGCGCTC 180617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795149763126320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |