Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq530 138 3e-27 seq7 113 1e-19 seq38 105 2e-17 >seq530 Length=496674 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||||| ||||||||| | | ||| | || ||| Sbjct 171260 AGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 171201 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||||||||||||||||||||| ||||||||| ||| || || || Sbjct 171200 TCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCT 171141 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||||| ||| ||| || || | |||||| ||| Sbjct 171140 TGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTC 171081 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 171080 TTGCCAGTCAGGGTCTTGACGAAGATTTG 171052 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| |||||||| |||| ||||||||| | | || Sbjct 171497 CGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTT 171438 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||||||||| || ||||||||||||||||||||||| ||| || || Sbjct 171437 CGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCC 171378 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | || || ||||| Sbjct 171377 TCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAAT 171318 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || ||||| || || Sbjct 171317 GTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTG 171280 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || |||||||| || | ||||||||| | || || | || || Sbjct 171032 AGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 170973 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| || || ||||| |||||| || || || || Sbjct 170972 TCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCT 170913 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| ||| |||| |||||| | || || || || | ||||| ||| Sbjct 170912 TGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTC 170853 Query 199598 TTACCCGT 199605 || || || Sbjct 170852 TTGCCGGT 170845 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || || || || ||||| |||| ||||||||| | || || Sbjct 170760 CGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTG 170701 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||| | ||||||||||| || ||| || Sbjct 170700 CGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCC 170641 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | || || || | Sbjct 170640 TCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGG 170581 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 170580 GTGATGGTCTTTCCGGTGA 170562 >seq7 Length=239904 Score = 113 bits (124), Expect = 1e-19 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | |||||| || |||||||| |||| ||||||||| | | ||| Sbjct 273 CGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 214 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct 213 CGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGG 164 >seq38 Length=207270 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||||| |||| ||||||||| | || ||| | ||||| Sbjct 118478 AGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 118537 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| || ||||| |||||||| ||| || || ||| Sbjct 118538 TCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 118597 Query 199538 TGAATCTT 199545 || ||||| Sbjct 118598 TGGATCTT 118605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178913337601649