Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq23 329 3e-85
seq530 132 5e-26
seq38 89.7 5e-13
>seq23
Length=86929
Score = 329 bits (364), Expect = 3e-85
Identities = 587/846 (69%), Gaps = 17/846 (2%)
Strand=Plus/Plus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|| || || ||||| || ||||| || || || || || || ||| |||||| |
Sbjct 34486 TTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTC 34545
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACG 132720
||| || || |||||||||| | || |||| |||| |||||| || | ||
Sbjct 34546 TCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAG--GGCCAAC- 34602
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779
||||| | ||| || ||||||||||||||||| ||||| | | || | | | || ||
Sbjct 34603 AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATG-CCGAG 34661
Query 132780 CAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838
|||| |||| || || || ||| | | || ||||| || |||| || || ||||
Sbjct 34662 CAGAGCGCAT-GGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGA 34720
Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898
||| | || || | | | ||| ||| | | | | | ||| | | ||| |
Sbjct 34721 TGATAGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGAAGAGAAGGCAGG 34780
Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958
| |||||| |||| ||||||||| | || ||||| |||||| ||| || | ||||
Sbjct 34781 CGAAGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGG 34840
Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018
|||| || ||||| || |||||||| || |||| ||||||| || ||||||| |
Sbjct 34841 GCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATAC 34900
Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078
|||| || || ||||| || || ||||| | | |||| |||| | ||| || |||||
Sbjct 34901 CCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGGAGATCC 34960
Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138
| ||||| ||||| |||||||| | || ||| || || | ||||||||||| | |
Sbjct 34961 ATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGA--A 35018
Query 133139 AACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196
| | | | | || | || ||| | ||| ||||||||||| || || | ||
Sbjct 35019 GAGGTACCTGCGCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAGGTCTC 35078
Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256
||||| ||||||||||| |||||| || ||||| ||||| || |||||| | ||
Sbjct 35079 TGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTG 35138
Query 133257 CACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAA 133316
||||| || ||| ||||| || || || |||||||| ||||| ||| ||| |||||
Sbjct 35139 TACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAA 35198
Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAGTC 133373
||||| || ||||| |||||| |||||||| ||||| | ||| | ||||||
Sbjct 35199 GAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTCCAGTC 35258
Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433
| | ||||||||| ||||| | |||||| ||||||| || || |||||||| || ||
Sbjct 35259 GTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCTT 35318
Query 133434 GTACAT 133439
||||||
Sbjct 35319 GTACAT 35324
>seq530
Length=496674
Score = 132 bits (146), Expect = 5e-26
Identities = 161/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || ||||| |||||||| |||| || || | | |
Sbjct 171049 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 171108
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || || |||| ||||| ||||| ||||| | |||||
Sbjct 171109 GACACTATTGACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCA 171167
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| || || ||| |||| |||| || || ||| |||||||||
Sbjct 171168 ACAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAA 171227
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||| | || || || |||||||| |||
Sbjct 171228 CATCCAAAAGGAGTCCACACTTCACTTGGTGCTTCGT 171264
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || || || ||||| || | || |||||| | | |
Sbjct 171277 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 171336
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| || | | ||||| || |||| ||||| ||||| || || | |||||
Sbjct 171337 GACA-CGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCA 171395
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| || || |||||||| |||| || || ||| ||||||||
Sbjct 171396 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAA 171455
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || || || |||||||| ||| | | |||||
Sbjct 171456 CATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGCGG 171503
Score = 105 bits (116), Expect = 7e-18
Identities = 143/196 (73%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| || || ||||||||| |||| || ||| | | |||| | | || | | ||
Sbjct 170562 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATG--TCAA 170619
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || |||| ||||| ||||| |||||| | ||||| ||||| | || | ||| ||
Sbjct 170620 GAGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGG 170679
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
||| ||||| || || | |||||||| ||||||||||||||| |||||| | || ||
Sbjct 170680 CAAGCAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCT 170739
Query 38444 GCATTTGGTGCTGCGT 38459
|||| | || || |||
Sbjct 170740 GCATCTCGTCCTCCGT 170755
>seq38
Length=207270
Score = 89.7 bits (98), Expect = 5e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| |||||| | ||||||||||| || || | ||| || ||
Sbjct 118605 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCCGGAAAG 118546
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || || | ||||| || ||||||||||||||| ||||| | || || ||
Sbjct 118545 CAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACCCTCCAC 118486
Query 38448 TTGGTGCTGCGT 38459
||||| || |||
Sbjct 118485 TTGGTCCTCCGT 118474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169380068480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |