Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq23 329 3e-85 seq530 132 5e-26 seq38 89.7 5e-13 >seq23 Length=86929 Score = 329 bits (364), Expect = 3e-85 Identities = 587/846 (69%), Gaps = 17/846 (2%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||||| || ||||| || || || || || || ||| |||||| | Sbjct 34486 TTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTC 34545 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACG 132720 ||| || || |||||||||| | || |||| |||| |||||| || | || Sbjct 34546 TCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAG--GGCCAAC- 34602 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 ||||| | ||| || ||||||||||||||||| ||||| | | || | | | || || Sbjct 34603 AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATG-CCGAG 34661 Query 132780 CAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 |||| |||| || || || ||| | | || ||||| || |||| || || |||| Sbjct 34662 CAGAGCGCAT-GGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGA 34720 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898 ||| | || || | | | ||| ||| | | | | | ||| | | ||| | Sbjct 34721 TGATAGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGAAGAGAAGGCAGG 34780 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 | |||||| |||| ||||||||| | || ||||| |||||| ||| || | |||| Sbjct 34781 CGAAGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGG 34840 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 |||| || ||||| || |||||||| || |||| ||||||| || ||||||| | Sbjct 34841 GCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATAC 34900 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078 |||| || || ||||| || || ||||| | | |||| |||| | ||| || ||||| Sbjct 34901 CCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGGAGATCC 34960 Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 | ||||| ||||| |||||||| | || ||| || || | ||||||||||| | | Sbjct 34961 ATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGA--A 35018 Query 133139 AACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 | | | | | || | || ||| | ||| ||||||||||| || || | || Sbjct 35019 GAGGTACCTGCGCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAGGTCTC 35078 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 ||||| ||||||||||| |||||| || ||||| ||||| || |||||| | || Sbjct 35079 TGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTG 35138 Query 133257 CACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAA 133316 ||||| || ||| ||||| || || || |||||||| ||||| ||| ||| ||||| Sbjct 35139 TACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAA 35198 Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAGTC 133373 ||||| || ||||| |||||| |||||||| ||||| | ||| | |||||| Sbjct 35199 GAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTCCAGTC 35258 Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433 | | ||||||||| ||||| | |||||| ||||||| || || |||||||| || || Sbjct 35259 GTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCTT 35318 Query 133434 GTACAT 133439 |||||| Sbjct 35319 GTACAT 35324 >seq530 Length=496674 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| |||||||| |||| || || | | | Sbjct 171049 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 171108 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| ||||| ||||| ||||| | ||||| Sbjct 171109 GACACTATTGACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCA 171167 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| || || ||| |||| |||| || || ||| ||||||||| Sbjct 171168 ACAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAA 171227 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || |||||||| ||| Sbjct 171228 CATCCAAAAGGAGTCCACACTTCACTTGGTGCTTCGT 171264 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||| || | || |||||| | | | Sbjct 171277 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 171336 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | ||||| || |||| ||||| ||||| || || | ||||| Sbjct 171337 GACA-CGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCA 171395 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || |||||||| |||| || || ||| |||||||| Sbjct 171396 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAA 171455 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || |||||||| ||| | | ||||| Sbjct 171456 CATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGCGG 171503 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| || || ||||||||| |||| || ||| | | |||| | | || | | || Sbjct 170562 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATG--TCAA 170619 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || |||| ||||| ||||| |||||| | ||||| ||||| | || | ||| || Sbjct 170620 GAGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGG 170679 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || || | |||||||| ||||||||||||||| |||||| | || || Sbjct 170680 CAAGCAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCT 170739 Query 38444 GCATTTGGTGCTGCGT 38459 |||| | || || ||| Sbjct 170740 GCATCTCGTCCTCCGT 170755 >seq38 Length=207270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| | ||||||||||| || || | ||| || || Sbjct 118605 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCCGGAAAG 118546 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | ||||| || ||||||||||||||| ||||| | || || || Sbjct 118545 CAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACCCTCCAC 118486 Query 38448 TTGGTGCTGCGT 38459 ||||| || ||| Sbjct 118485 TTGGTCCTCCGT 118474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169380068480