Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq377 345 5e-90 seq501 143 3e-29 seq88 132 6e-26 seq504 118 1e-21 seq17 96.9 4e-15 >seq377 Length=510444 Score = 345 bits (382), Expect = 5e-90 Identities = 686/1011 (68%), Gaps = 5/1011 (0%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| || || ||||| | || ||||| ||||| |||||||||||||| Sbjct 312332 TCACCAGACAGGATAGCAGCCTGGACGGCGGCACCGTAAGCGACAGCCTCATCGGGGTTG 312391 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || | || ||| Sbjct 312392 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 312451 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || |||||||||||||| || || || | || || || |||||||| | Sbjct 312452 ATACGGGTGGATCCACCGACCAAGACAATCTCGTGGACGGAGGACTTGTCGATCTTAGCA 312511 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || ||||| || ||||| ||||| | |||| || || || Sbjct 312512 TCGCGGAGGACACGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCT 312571 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| |||||||| ||| || ||||| || | || ||||| | || || || Sbjct 312572 TCGAAACGAGCACGGGTGATGCTGGTGTAGAAGTCGATACCCTCGTACAGGGAGTCGATC 312631 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || || | || ||||| || | ||| || || ||||| Sbjct 312632 TCGATGGAGGTCTGAGCGGAAGAGGACAGAGTGCGCTTGGCCCTCTCGCAAGCGGTTCGG 312691 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | |||||| || ||||| | ||| || | || ||||| || ||||| || ||||| Sbjct 312692 AGACGACGGAGAGCACGAGCGTTGGAGGTCAAGTCCTTCTTGTGCTTACGCTTGAACTCG 312751 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | | |||||| | ||| | ||||| || |||||||||||||| || || || Sbjct 312752 TTGGTGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCG 312811 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 || || | ||||| || |||||||| | || ||| | || | || ||||| || ||| Sbjct 312812 GCAGTGGACTTGACCTCGAAGATACCCTCCTCGATGGTCAAGAGGGAGACATCGAAGGTA 312871 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 |||||||||| ||| || || || ||||| || | || | ||||| || |||||| Sbjct 312872 CCACCACCCAAGTCGAAGATAAGGACGTTGCGCTCACCCTCGGTCTTCTTGTCAAGACCG 312931 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 || ||||| || || || || || || || || ||||| || ||| ||||| ||||| Sbjct 312932 TAGGCGATGGCAGCGGCAGTAGGCTCGTTGATGATACGGAGGACGTTGAGGCCGGCAATG 312991 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | ||||| || || || || |||||||| ||||| ||||| || || || || ||| Sbjct 312992 AGACCAGCATCCTTGGTAGCCTGACGTTGCGAGTCGTTGAAGTATGCGGGAACAGTGACG 313051 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| | || | |||||| || || || || | || |||| ||||| | Sbjct 313052 ACAGCGTTGTTAACGGTGCCACCGAGGTAGGACTCGGCAGTTTCCCTCATCTTGGTCAAG 313111 Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTC 7848 ||||| ||||| ||||| || | | || ||| ||| || || || || || || | Sbjct 313112 ACCATAGATGAGATCTCCTCGGGTGTGAA-TGTCTTCTCCTCGCCCTTGAACTCGACCTG 313170 Query 7849 AATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908 || | || || |||| | | ||| ||||| | | | | ||||| ||| | Sbjct 313171 GATAACTGGCTT-GCCGC--CCTTGTCGATGACCTTGAAGGGGAAGTGCTTCATGTCGGC 313227 Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968 ||||||| ||| | ||||| | ||||| || |||||||| || || || ||||| Sbjct 313228 CTGGACCTCAGCGTCGGCGAACTTGCGACCGATGAGGCGCTTTGCGTCGAAGACGGTGTT 313287 Query 7969 TTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 |||||||||||| ||||||||| || | ||| || || ||||| || Sbjct 313288 GACGGGGTTCATGGCGACTTGGTTCTTTGCGGAGTCACCAATGAGACGCTC 313338 >seq501 Length=295363 Score = 143 bits (158), Expect = 3e-29 Identities = 241/348 (69%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 |||||| |||||| | | ||||| || | |||||||||||| || || || || || Sbjct 217741 GAAGTGGTCAAGGAGGTTAGTGTCGAAGTCCTGACCACCCAAGTGGGTGTCTCCAGCAGT 217682 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 || ||||| || | ||| || | |||| | | || ||||| || |||||||| Sbjct 217681 AGCCTTGACGGTGAAAACACCACCCTGGATGTGCAGAAGAGAGACATCGAAAGTACCACC 217622 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT---ATCGAGACCGTA 7611 ||| || || | ||||| |||||| | || | ||| || | |||||||||| Sbjct 217621 ACCAAGATCGTAGATGAGGACGTTCCTCTCCTTGTCAGACTTTCCGGAACCGAGACCGTA 217562 Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671 |||||||| || || || || || || || ||||| ||| ||| ||||||||||| | Sbjct 217561 GGCGATAGCGGCGGCGGTGGGCTCGTTGATGATACGGAGAACGTTGAGGCCAGCAATGGC 217502 Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 | || || || || ||||| || || ||||| |||||||| ||||| || | ||| Sbjct 217501 ACCGGCGTCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTGATGAC 217442 Query 7732 CGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || | | ||| ||||| ||||| | | || |||| || ||||| Sbjct 217441 GGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCAGCGACCTCCTTCAT 217394 >seq88 Length=290544 Score = 132 bits (146), Expect = 6e-26 Identities = 401/614 (65%), Gaps = 9/614 (1%) Strand=Plus/Plus Query 105463 TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCC 105522 ||||| ||||||| ||| |||| || |||| |||||| || || | || || | Sbjct 179986 TCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCAC 180045 Query 105523 TGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCT 105582 | | || || | || || ||| || || | | || ||| || |||||||| | || Sbjct 180046 TCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCA 180105 Query 105583 GGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAA 105642 |||||||||| || | ||||| || ||| | |||| || | || || ||| Sbjct 180106 GGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTG 180165 Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702 || | || || || | | | || ||||||||||| || | |||| || | | Sbjct 180166 CGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCA 180225 Query 105703 CCTTTACGAC----GCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAA 105758 ||| ||| ||| | || | | |||||| | || || ||| || || || | Sbjct 180226 CCTGGACGCTTGTTGCCACCCTGG-TCGACATAGCGAGCAGTGTTGTTGTATACACGGAG 180284 Query 105759 CATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACG 105818 ||| ||||| | ||||| |||||||| || || |||| || | ||| | | ||||| Sbjct 180285 CATGGGAATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACG 180344 Query 105819 TACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTT 105878 | ||| |||| | |||||||| ||||| ||| ||| |||||| || Sbjct 180345 AATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTT 180404 Query 105879 TACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGA 105938 | ||| |||||||| |||||||| || || ||||| | | || ||||| || || || Sbjct 180405 GAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGA 180464 Query 105939 CATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACC 105998 |||||||||| ||||| || || ||||||| || || | || || |||| | | Sbjct 180465 CATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA--C 180522 Query 105999 TTTCGATA-ACG-CTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCA 106056 ||| || | | | ||||| || || | | | | || || || | || ||||| ||| Sbjct 180523 TTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCA 180582 Query 106057 ATAGCGACGCGCAT 106070 | ||| || ||||| Sbjct 180583 ACAGCAACACGCAT 180596 >seq504 Length=802703 Score = 118 bits (130), Expect = 1e-21 Identities = 224/328 (68%), Gaps = 10/328 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||| | ||||| || |||| ||| Sbjct 164516 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCGTTGGTAGACTTGACCTCGAAGACACCA 164575 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | | ||| | | | || | ||| || ||||||||||||| || | | |||| Sbjct 164576 GCCTGAATCTCGAGAATGGAGATATCGAAAGTACCACCACCCAAATCGTAGACAGCTACG 164635 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| ||| || ||| || |||||||| |||| ||| || || || ||||| Sbjct 164636 ------ACGTTGTCGGTGGCCTTGTCAAGACCGTAGGCGAGAGCGGCAGCGGTGGGTTCG 164689 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTGTC 7694 || | | ||| ||| ||| || ||||| || ||| | || || || || ||||| | Sbjct 164690 TTGACGACACGGAGAACGTTGAGACCAGCGAT--TTGACCAGCGTCCTTGGTAGCTTGAC 164747 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || ||||| |||||||| ||||| || ||||| |||| | |||| ||||| || | Sbjct 164748 GCTGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGACGTTCTTGCCCA 164807 Query 7755 GATACGATTCCGCGATATCTTTCATTTT 7782 || || || || | || ||||| || Sbjct 164808 TGTATGACTCGGCAGTCTCCTTCATCTT 164835 >seq17 Length=296578 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| ||||||||||| || | ||| || || || || || || | || ||| ||| || Sbjct 211992 CTTGTCGAGACCGTAAGCCAGAGCGGCAGCGGTGGGCTCGTTCACAACACGGAGAACATT 211933 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || ||||| |||||| | || || || || || || || | |||||||||||||| Sbjct 211932 GAGACCAGCGATAGTTCCGGCGTCCTTGGTGGCGGCACGCTGAGCGTCGTTAAAGTAGGC 211873 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 || || || || || |||| | |||| || ||||| || ||||| | || || Sbjct 211872 GGGAACGGTAACAACAGCGTTCTTGACAGACTCGCCGAGGTAGCTCTCCGCAACCTCCTT 211813 Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||| || | |||||||| | |||||||| || Sbjct 211812 CATCTTAGCCAGAACCATAGCGGAAATCTCCTC 211780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128457279480