Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq377 345 5e-90
seq501 143 3e-29
seq88 132 6e-26
seq504 118 1e-21
seq17 96.9 4e-15
>seq377
Length=510444
Score = 345 bits (382), Expect = 5e-90
Identities = 686/1011 (68%), Gaps = 5/1011 (0%)
Strand=Plus/Plus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | ||| || || ||||| | || ||||| ||||| ||||||||||||||
Sbjct 312332 TCACCAGACAGGATAGCAGCCTGGACGGCGGCACCGTAAGCGACAGCCTCATCGGGGTTG 312391
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || | || || ||||| || | || || | ||| | || | || |||
Sbjct 312392 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 312451
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || |||||||||||||| || || || | || || || |||||||| |
Sbjct 312452 ATACGGGTGGATCCACCGACCAAGACAATCTCGTGGACGGAGGACTTGTCGATCTTAGCA 312511
Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249
|| || || ||||| || ||||| ||||| | |||| || || ||
Sbjct 312512 TCGCGGAGGACACGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCT 312571
Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309
|| ||||| |||||||| ||| || ||||| || | || ||||| | || || ||
Sbjct 312572 TCGAAACGAGCACGGGTGATGCTGGTGTAGAAGTCGATACCCTCGTACAGGGAGTCGATC 312631
Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369
|| |||| || || || | || || | || ||||| || | ||| || || |||||
Sbjct 312632 TCGATGGAGGTCTGAGCGGAAGAGGACAGAGTGCGCTTGGCCCTCTCGCAAGCGGTTCGG 312691
Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429
| |||||| || ||||| | ||| || | || ||||| || ||||| || |||||
Sbjct 312692 AGACGACGGAGAGCACGAGCGTTGGAGGTCAAGTCCTTCTTGTGCTTACGCTTGAACTCG 312751
Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489
| | |||||| | ||| | ||||| || |||||||||||||| || || ||
Sbjct 312752 TTGGTGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCG 312811
Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549
|| || | ||||| || |||||||| | || ||| | || | || ||||| || |||
Sbjct 312812 GCAGTGGACTTGACCTCGAAGATACCCTCCTCGATGGTCAAGAGGGAGACATCGAAGGTA 312871
Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609
|||||||||| ||| || || || ||||| || | || | ||||| || ||||||
Sbjct 312872 CCACCACCCAAGTCGAAGATAAGGACGTTGCGCTCACCCTCGGTCTTCTTGTCAAGACCG 312931
Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669
|| ||||| || || || || || || || || ||||| || ||| ||||| |||||
Sbjct 312932 TAGGCGATGGCAGCGGCAGTAGGCTCGTTGATGATACGGAGGACGTTGAGGCCGGCAATG 312991
Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729
| ||||| || || || || |||||||| ||||| ||||| || || || || |||
Sbjct 312992 AGACCAGCATCCTTGGTAGCCTGACGTTGCGAGTCGTTGAAGTATGCGGGAACAGTGACG 313051
Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789
|| |||| | || | |||||| || || || || | || |||| ||||| |
Sbjct 313052 ACAGCGTTGTTAACGGTGCCACCGAGGTAGGACTCGGCAGTTTCCCTCATCTTGGTCAAG 313111
Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTC 7848
||||| ||||| ||||| || | | || ||| ||| || || || || || || |
Sbjct 313112 ACCATAGATGAGATCTCCTCGGGTGTGAA-TGTCTTCTCCTCGCCCTTGAACTCGACCTG 313170
Query 7849 AATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908
|| | || || |||| | | ||| ||||| | | | | ||||| ||| |
Sbjct 313171 GATAACTGGCTT-GCCGC--CCTTGTCGATGACCTTGAAGGGGAAGTGCTTCATGTCGGC 313227
Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968
||||||| ||| | ||||| | ||||| || |||||||| || || || |||||
Sbjct 313228 CTGGACCTCAGCGTCGGCGAACTTGCGACCGATGAGGCGCTTTGCGTCGAAGACGGTGTT 313287
Query 7969 TTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019
|||||||||||| ||||||||| || | ||| || || ||||| ||
Sbjct 313288 GACGGGGTTCATGGCGACTTGGTTCTTTGCGGAGTCACCAATGAGACGCTC 313338
>seq501
Length=295363
Score = 143 bits (158), Expect = 3e-29
Identities = 241/348 (69%), Gaps = 3/348 (1%)
Strand=Plus/Minus
Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494
|||||| |||||| | | ||||| || | |||||||||||| || || || || ||
Sbjct 217741 GAAGTGGTCAAGGAGGTTAGTGTCGAAGTCCTGACCACCCAAGTGGGTGTCTCCAGCAGT 217682
Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554
|| ||||| || | ||| || | |||| | | || ||||| || ||||||||
Sbjct 217681 AGCCTTGACGGTGAAAACACCACCCTGGATGTGCAGAAGAGAGACATCGAAAGTACCACC 217622
Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT---ATCGAGACCGTA 7611
||| || || | ||||| |||||| | || | ||| || | ||||||||||
Sbjct 217621 ACCAAGATCGTAGATGAGGACGTTCCTCTCCTTGTCAGACTTTCCGGAACCGAGACCGTA 217562
Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671
|||||||| || || || || || || || ||||| ||| ||| ||||||||||| |
Sbjct 217561 GGCGATAGCGGCGGCGGTGGGCTCGTTGATGATACGGAGAACGTTGAGGCCAGCAATGGC 217502
Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
| || || || || ||||| || || ||||| |||||||| ||||| || | |||
Sbjct 217501 ACCGGCGTCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTGATGAC 217442
Query 7732 CGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779
|| | | ||| ||||| ||||| | | || |||| || |||||
Sbjct 217441 GGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCAGCGACCTCCTTCAT 217394
>seq88
Length=290544
Score = 132 bits (146), Expect = 6e-26
Identities = 401/614 (65%), Gaps = 9/614 (1%)
Strand=Plus/Plus
Query 105463 TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCC 105522
||||| ||||||| ||| |||| || |||| |||||| || || | || || |
Sbjct 179986 TCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCAC 180045
Query 105523 TGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCT 105582
| | || || | || || ||| || || | | || ||| || |||||||| | ||
Sbjct 180046 TCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCA 180105
Query 105583 GGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAA 105642
|||||||||| || | ||||| || ||| | |||| || | || || |||
Sbjct 180106 GGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTG 180165
Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702
|| | || || || | | | || ||||||||||| || | |||| || | |
Sbjct 180166 CGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCA 180225
Query 105703 CCTTTACGAC----GCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAA 105758
||| ||| ||| | || | | |||||| | || || ||| || || || |
Sbjct 180226 CCTGGACGCTTGTTGCCACCCTGG-TCGACATAGCGAGCAGTGTTGTTGTATACACGGAG 180284
Query 105759 CATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACG 105818
||| ||||| | ||||| |||||||| || || |||| || | ||| | | |||||
Sbjct 180285 CATGGGAATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACG 180344
Query 105819 TACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTT 105878
| ||| |||| | |||||||| ||||| ||| ||| |||||| ||
Sbjct 180345 AATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTT 180404
Query 105879 TACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGA 105938
| ||| |||||||| |||||||| || || ||||| | | || ||||| || || ||
Sbjct 180405 GAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGA 180464
Query 105939 CATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACC 105998
|||||||||| ||||| || || ||||||| || || | || || |||| | |
Sbjct 180465 CATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA--C 180522
Query 105999 TTTCGATA-ACG-CTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCA 106056
||| || | | | ||||| || || | | | | || || || | || ||||| |||
Sbjct 180523 TTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCA 180582
Query 106057 ATAGCGACGCGCAT 106070
| ||| || |||||
Sbjct 180583 ACAGCAACACGCAT 180596
>seq504
Length=802703
Score = 118 bits (130), Expect = 1e-21
Identities = 224/328 (68%), Gaps = 10/328 (3%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||| | ||| || || || ||| | ||||| || |||| |||
Sbjct 164516 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCGTTGGTAGACTTGACCTCGAAGACACCA 164575
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| | ||| | | | || | ||| || ||||||||||||| || | | ||||
Sbjct 164576 GCCTGAATCTCGAGAATGGAGATATCGAAAGTACCACCACCCAAATCGTAGACAGCTACG 164635
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
||| ||| || ||| || |||||||| |||| ||| || || || |||||
Sbjct 164636 ------ACGTTGTCGGTGGCCTTGTCAAGACCGTAGGCGAGAGCGGCAGCGGTGGGTTCG 164689
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTGTC 7694
|| | | ||| ||| ||| || ||||| || ||| | || || || || ||||| |
Sbjct 164690 TTGACGACACGGAGAACGTTGAGACCAGCGAT--TTGACCAGCGTCCTTGGTAGCTTGAC 164747
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
| || || ||||| |||||||| ||||| || ||||| |||| | |||| ||||| || |
Sbjct 164748 GCTGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGACGTTCTTGCCCA 164807
Query 7755 GATACGATTCCGCGATATCTTTCATTTT 7782
|| || || || | || ||||| ||
Sbjct 164808 TGTATGACTCGGCAGTCTCCTTCATCTT 164835
>seq17
Length=296578
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656
||| ||||||||||| || | ||| || || || || || || | || ||| ||| ||
Sbjct 211992 CTTGTCGAGACCGTAAGCCAGAGCGGCAGCGGTGGGCTCGTTCACAACACGGAGAACATT 211933
Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716
|| ||||| |||||| | || || || || || || || | ||||||||||||||
Sbjct 211932 GAGACCAGCGATAGTTCCGGCGTCCTTGGTGGCGGCACGCTGAGCGTCGTTAAAGTAGGC 211873
Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776
|| || || || || |||| | |||| || ||||| || ||||| | || ||
Sbjct 211872 GGGAACGGTAACAACAGCGTTCTTGACAGACTCGCCGAGGTAGCTCTCCGCAACCTCCTT 211813
Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
||| || | |||||||| | |||||||| ||
Sbjct 211812 CATCTTAGCCAGAACCATAGCGGAAATCTCCTC 211780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635128457279480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |