Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq88 194 2e-44
seq516 111 2e-19
seq526 86.0 7e-12
seq153 86.0 7e-12
seq76 86.0 7e-12
seq8 86.0 7e-12
seq1 86.0 7e-12
>seq88
Length=290544
Score = 194 bits (214), Expect = 2e-44
Identities = 1098/1744 (63%), Gaps = 37/1744 (2%)
Strand=Plus/Plus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466
|| ||||| ||||| || || ||||||||||||||||| || || | ||||| ||||
Sbjct 178888 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 178946
Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526
|| ||| | || || || ||| | ||| | |||||||||||| || |||||
Sbjct 178947 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAA 179006
Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG--GCTA-ATTTCCCAGACAGT 109583
|||||| ||||| ||||| || ||||| | || | || | || |||||||| ||
Sbjct 179007 AGCACCACGGTCAGCGGCCATCTCAATGATCC---TTCGCTGCGAGATCTCCCAGACGGT 179063
Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643
|||||| | |||| | || || || |||| || | ||| || || ||| |
Sbjct 179064 CTTGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGGGAATCCTGGCAATCGAACCTCCATC 179123
Query 109644 CTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC--- 109700
| || | | |||||| | | ||||| ||||| | | | || | |||
Sbjct 179124 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCA---TGTCGACAAGGTCCTT 179180
Query 109701 -AACAAG-ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758
| ||| ||| |||||| || || |||||||| || || ||| ||||||
Sbjct 179181 GAGCAACCATGG--GTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATG 179238
Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818
|| | ||||| || ||||| ||||| |||||||| || || |||| |||||| || ||
Sbjct 179239 TTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTT 179298
Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT 109878
|||||||| || ||||| || ||| || | ||| | | | | ||| ||
Sbjct 179299 GGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGA 179358
Query 109879 GCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGT 109938
| |||| || | | || || || | || || ||||||||| || ||
Sbjct 179359 GACGCCCAGTCCCAGAGGTCAGTAG-----GTGTGAC-ATTCCACATATCGTACTGGAGG 179412
Query 109939 ACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998
| ||||| | | ||||| || | | | ||| ||| | || ||| || |
Sbjct 179413 ATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATG 179472
Query 109999 TCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058
||| |||| | || || ||||| || || ||||| || || || || |
Sbjct 179473 TCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTC 179532
Query 110059 CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGA 110118
|| || || | ||||| ||||| | | || |||| || ||||| |||
Sbjct 179533 TTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGA 179592
Query 110119 ACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAA 110178
||||| | ||| ||||| || || | ||| ||| || || ||| || |||||
Sbjct 179593 ACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAG 179652
Query 110179 AAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGT 110238
|||| ||||||| | || | || || || || |||| ||| |||||
Sbjct 179653 TGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGC 179712
Query 110239 TTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCA 110298
|| | | | || ||| | || | | |||| | || || |||| ||| ||
Sbjct 179713 TTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCC 179772
Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358
| ||||| |||| ||| || ||||||| |||| ||| || || |||| ||||
Sbjct 179773 AAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTG 179832
Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418
|| || ||| ||| | ||||||||| || ||| |||||| || ||||| |||
Sbjct 179833 GAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAG 179892
Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCG 110478
||||| | ||| ||||||| || ||||||| || || ||||| | ||| | |
Sbjct 179893 AGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGT 179952
Query 110479 GCGGGGACAGTTGCGTTAGCGAGACCT----TCCTCCTCGTACTTGGTGTACAAGTCCTC 110534
||| | ||||| || ||| | | | || |||||| | ||||| | ||
Sbjct 179953 GCGCGAACAGTCTCG----CGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTC 180008
Query 110535 AAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCA 110594
||||| | ||||| ||||| | || || || || || || | || | |||
Sbjct 180009 GAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCA 180068
Query 110595 ATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAG 110654
|| || || | ||| | ||||||||| |||||||||||||||| || |||| ||
Sbjct 180069 GTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAG 180128
Query 110655 GTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGAT 110714
|| || || |||| || | || ||||| ||| || || | ||| | | ||
Sbjct 180129 ATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGAC 180188
Query 110715 ATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTG 110771
|| | ||||||||| ||||| |||| |||| || || ||| || ||||
Sbjct 180189 GTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTG 180248
Query 110772 GTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTG 110831
|| |||||||| || ||| ||| | || | |||||| ||||| | |||| |||
Sbjct 180249 GTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGT 180308
Query 110832 ACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAAT 110891
|| || || || | || || | | ||||||||| ||| | | | |||||
Sbjct 180309 TCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAAT 180368
Query 110892 ACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAA 110950
||| || || ||| || ||||| ||| ||||||| | ||||| || || |
Sbjct 180369 ACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCT-TGAGTGTGTCGTAAATGCCGTCGA 180427
Query 110951 TCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCG 111010
| || |||| || | || || ||||| || ||||| || || || || ||||
Sbjct 180428 TGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCG 180487
Query 111011 CATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGT 111070
| ||||| | || || | || || |||| ||| ||||| | || ||| || |
Sbjct 180488 CGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCT 180547
Query 111071 CGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATT 111130
||| || | || | |||||||| |||| ||||| ||||||| ||| | ||
Sbjct 180548 CGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTT 180607
Query 111131 GAGG 111134
| ||
Sbjct 180608 GTGG 180611
>seq516
Length=247985
Score = 111 bits (122), Expect = 2e-19
Identities = 274/408 (67%), Gaps = 11/408 (3%)
Strand=Plus/Plus
Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565
|||||||| || || | | || || | || |||| |||| ||||| ||| | ||
Sbjct 61590 TCGAAACGGCCGGGTCTCATGAGCGCCTTGTCCAGAACATCGGGTCGGTTAGTACCAGCC 61649
Query 11566 ATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
| || || | ||| ||||| ||| ||| |||||||| ||||| |||| |||||||
Sbjct 61650 AGAACGACGACTTGCTCAGTCG---TGTTGAATCCGTCCATCTCTGTTAGAATCTGGTTG 61706
Query 11623 ATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGC--CGAACGCTTCTTACCG 11679
| || || |||||||||||| | | | |||| ||| || ||||
Sbjct 61707 AGAGTTGCCTCTCGCTCATCGTTGCCACCACCGAAGTTCTGCTTCGATCGGGCACGACCG 61766
Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739
| |||||||||||| || ||||| | ||| || || | | || || | ||||
Sbjct 61767 ATAGCGTCAATCTCGTCAATGAAGATGATGCAGGGCGTGCTCTTGCGCGCATTGGCGAAC 61826
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA- 11798
| || || |||||| || |||||||| ||||||||||| ||||| | | ||
Sbjct 61827 AAGTCTCGGACACGCGATGCACCAACACCAACGAACATCTCGACGAACTCAGAACCACTG 61886
Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858
|||||||| ||| ||||| ||||| || || | || || || |||||||||||
Sbjct 61887 ACACTGAA-GAAAGGAACGCCTGACTCTCCCGCAGTAGCCTTGGCAAGAAGAGTCTTACC 61945
Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906
||||| || | |||| || | || || || |||||||| |||||
Sbjct 61946 AGTACCTGGGGATCCAGATAGGATAGCACCGCGAGGGATCTTCGCACC 61993
>seq526
Length=557838
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 551143 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 551084
Query 136777 GGGAACA 136783
| || ||
Sbjct 551083 GTGACCA 551077
>seq153
Length=167980
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 82346 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 82287
Query 136777 GGGAACA 136783
| || ||
Sbjct 82286 GTGACCA 82280
>seq76
Length=169481
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 75627 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 75568
Query 136777 GGGAACA 136783
| || ||
Sbjct 75567 GTGACCA 75561
>seq8
Length=416082
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 167400 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 167459
Query 136777 GGGAACA 136783
| || ||
Sbjct 167460 GTGACCA 167466
>seq1
Length=382040
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 133978 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 134037
Query 136777 GGGAACA 136783
| || ||
Sbjct 134038 GTGACCA 134044
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588971972876600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |