Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq88 194 2e-44 seq516 111 2e-19 seq526 86.0 7e-12 seq153 86.0 7e-12 seq76 86.0 7e-12 seq8 86.0 7e-12 seq1 86.0 7e-12 >seq88 Length=290544 Score = 194 bits (214), Expect = 2e-44 Identities = 1098/1744 (63%), Gaps = 37/1744 (2%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 || ||||| ||||| || || ||||||||||||||||| || || | ||||| |||| Sbjct 178888 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 178946 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 || ||| | || || || ||| | ||| | |||||||||||| || ||||| Sbjct 178947 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAA 179006 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG--GCTA-ATTTCCCAGACAGT 109583 |||||| ||||| ||||| || ||||| | || | || | || |||||||| || Sbjct 179007 AGCACCACGGTCAGCGGCCATCTCAATGATCC---TTCGCTGCGAGATCTCCCAGACGGT 179063 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 |||||| | |||| | || || || |||| || | ||| || || ||| | Sbjct 179064 CTTGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGGGAATCCTGGCAATCGAACCTCCATC 179123 Query 109644 CTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC--- 109700 | || | | |||||| | | ||||| ||||| | | | || | ||| Sbjct 179124 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCA---TGTCGACAAGGTCCTT 179180 Query 109701 -AACAAG-ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758 | ||| ||| |||||| || || |||||||| || || ||| |||||| Sbjct 179181 GAGCAACCATGG--GTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATG 179238 Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818 || | ||||| || ||||| ||||| |||||||| || || |||| |||||| || || Sbjct 179239 TTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTT 179298 Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT 109878 |||||||| || ||||| || ||| || | ||| | | | | ||| || Sbjct 179299 GGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGA 179358 Query 109879 GCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGT 109938 | |||| || | | || || || | || || ||||||||| || || Sbjct 179359 GACGCCCAGTCCCAGAGGTCAGTAG-----GTGTGAC-ATTCCACATATCGTACTGGAGG 179412 Query 109939 ACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998 | ||||| | | ||||| || | | | ||| ||| | || ||| || | Sbjct 179413 ATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATG 179472 Query 109999 TCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058 ||| |||| | || || ||||| || || ||||| || || || || | Sbjct 179473 TCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTC 179532 Query 110059 CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGA 110118 || || || | ||||| ||||| | | || |||| || ||||| ||| Sbjct 179533 TTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGA 179592 Query 110119 ACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAA 110178 ||||| | ||| ||||| || || | ||| ||| || || ||| || ||||| Sbjct 179593 ACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAG 179652 Query 110179 AAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGT 110238 |||| ||||||| | || | || || || || |||| ||| ||||| Sbjct 179653 TGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGC 179712 Query 110239 TTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCA 110298 || | | | || ||| | || | | |||| | || || |||| ||| || Sbjct 179713 TTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCC 179772 Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358 | ||||| |||| ||| || ||||||| |||| ||| || || |||| |||| Sbjct 179773 AAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTG 179832 Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418 || || ||| ||| | ||||||||| || ||| |||||| || ||||| ||| Sbjct 179833 GAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAG 179892 Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCG 110478 ||||| | ||| ||||||| || ||||||| || || ||||| | ||| | | Sbjct 179893 AGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGT 179952 Query 110479 GCGGGGACAGTTGCGTTAGCGAGACCT----TCCTCCTCGTACTTGGTGTACAAGTCCTC 110534 ||| | ||||| || ||| | | | || |||||| | ||||| | || Sbjct 179953 GCGCGAACAGTCTCG----CGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTC 180008 Query 110535 AAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCA 110594 ||||| | ||||| ||||| | || || || || || || | || | ||| Sbjct 180009 GAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCA 180068 Query 110595 ATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAG 110654 || || || | ||| | ||||||||| |||||||||||||||| || |||| || Sbjct 180069 GTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAG 180128 Query 110655 GTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGAT 110714 || || || |||| || | || ||||| ||| || || | ||| | | || Sbjct 180129 ATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGAC 180188 Query 110715 ATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTG 110771 || | ||||||||| ||||| |||| |||| || || ||| || |||| Sbjct 180189 GTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTG 180248 Query 110772 GTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTG 110831 || |||||||| || ||| ||| | || | |||||| ||||| | |||| ||| Sbjct 180249 GTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGT 180308 Query 110832 ACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAAT 110891 || || || || | || || | | ||||||||| ||| | | | ||||| Sbjct 180309 TCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAAT 180368 Query 110892 ACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAA 110950 ||| || || ||| || ||||| ||| ||||||| | ||||| || || | Sbjct 180369 ACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCT-TGAGTGTGTCGTAAATGCCGTCGA 180427 Query 110951 TCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCG 111010 | || |||| || | || || ||||| || ||||| || || || || |||| Sbjct 180428 TGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCG 180487 Query 111011 CATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGT 111070 | ||||| | || || | || || |||| ||| ||||| | || ||| || | Sbjct 180488 CGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCT 180547 Query 111071 CGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATT 111130 ||| || | || | |||||||| |||| ||||| ||||||| ||| | || Sbjct 180548 CGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTT 180607 Query 111131 GAGG 111134 | || Sbjct 180608 GTGG 180611 >seq516 Length=247985 Score = 111 bits (122), Expect = 2e-19 Identities = 274/408 (67%), Gaps = 11/408 (3%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || | | || || | || |||| |||| ||||| ||| | || Sbjct 61590 TCGAAACGGCCGGGTCTCATGAGCGCCTTGTCCAGAACATCGGGTCGGTTAGTACCAGCC 61649 Query 11566 ATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | || || | ||| ||||| ||| ||| |||||||| ||||| |||| ||||||| Sbjct 61650 AGAACGACGACTTGCTCAGTCG---TGTTGAATCCGTCCATCTCTGTTAGAATCTGGTTG 61706 Query 11623 ATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGC--CGAACGCTTCTTACCG 11679 | || || |||||||||||| | | | |||| ||| || |||| Sbjct 61707 AGAGTTGCCTCTCGCTCATCGTTGCCACCACCGAAGTTCTGCTTCGATCGGGCACGACCG 61766 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 | |||||||||||| || ||||| | ||| || || | | || || | |||| Sbjct 61767 ATAGCGTCAATCTCGTCAATGAAGATGATGCAGGGCGTGCTCTTGCGCGCATTGGCGAAC 61826 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA- 11798 | || || |||||| || |||||||| ||||||||||| ||||| | | || Sbjct 61827 AAGTCTCGGACACGCGATGCACCAACACCAACGAACATCTCGACGAACTCAGAACCACTG 61886 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 |||||||| ||| ||||| ||||| || || | || || || ||||||||||| Sbjct 61887 ACACTGAA-GAAAGGAACGCCTGACTCTCCCGCAGTAGCCTTGGCAAGAAGAGTCTTACC 61945 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||| || | |||| || | || || || |||||||| ||||| Sbjct 61946 AGTACCTGGGGATCCAGATAGGATAGCACCGCGAGGGATCTTCGCACC 61993 >seq526 Length=557838 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 551143 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 551084 Query 136777 GGGAACA 136783 | || || Sbjct 551083 GTGACCA 551077 >seq153 Length=167980 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 82346 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 82287 Query 136777 GGGAACA 136783 | || || Sbjct 82286 GTGACCA 82280 >seq76 Length=169481 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 75627 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 75568 Query 136777 GGGAACA 136783 | || || Sbjct 75567 GTGACCA 75561 >seq8 Length=416082 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 167400 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 167459 Query 136777 GGGAACA 136783 | || || Sbjct 167460 GTGACCA 167466 >seq1 Length=382040 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 133978 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 134037 Query 136777 GGGAACA 136783 | || || Sbjct 134038 GTGACCA 134044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971972876600