Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq88 289 3e-73
seq23 104 3e-17
>seq88
Length=290544
Score = 289 bits (320), Expect = 3e-73
Identities = 1122/1740 (64%), Gaps = 35/1740 (2%)
Strand=Plus/Plus
Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGA 105648
|||||||||||||| || |||||||| || ||||| || || | ||||||||||
Sbjct 178888 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 178946
Query 105649 GAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAA 105708
|| |||| ||| || || | |||| | || | ||| ||||||||||||
Sbjct 178947 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAA 179006
Query 105709 GCGACCACGTTGTGCCGCCATATCAATGACATCCTTCAT--CTTGATTTCCCACACTGTG 105766
|||||| | || ||||| ||||||| |||||| | ||| ||||| || ||
Sbjct 179007 AGCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTC 179064
Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTG--AATTGAACCCCCCG 105824
||| || |||| | || || ||||| | || || || || ||| ||||| ||
Sbjct 179065 TTGTAAAGGGTCTTTGTCTCCTCAGGGATGT-TGGGA-ATCCTGGCAATCGAACCTCCAT 179122
Query 105825 CCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGA 105884
| || || | | |||||| | || ||||| ||||| || | || || ||||
Sbjct 179123 CGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGA 179182
Query 105885 CGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTT 105942
| ||| |||||||| | ||||| || |||||| | | |||||||||
Sbjct 179183 GCAACCATGG--GTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTT 179240
Query 105943 CGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 106002
| ||||| || || ||||| || || || |||| || |||| |||||||| |||||
Sbjct 179241 GGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGG 179300
Query 106003 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAAC 106062
||| ||||| || | || ||| || | ||| | || || ||||| |||
Sbjct 179301 CATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGA 179360
Query 106063 ATCCCAGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCT 106120
||||||| || | || | ||| | || |||| ||||||| | || || | ||
Sbjct 179361 CGCCCAGTCCCAGAGGTCAG-TAGGTGTGACATTCC-ACATATCGTACTGGAGGATACCC 179418
Query 106121 TGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 106180
||||| |||||| || || | |||| || | ||| | | | || | || ||
Sbjct 179419 TGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCAT 179478
Query 106181 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 106240
| || | || || || ||||| || ||||| | || | || ||| |||
Sbjct 179479 GAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCT 179538
Query 106241 TCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 106300
|| ||||| || || | |||| | || |||| || |||||||||||||||
Sbjct 179539 TCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCC 179598
Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 106360
| ||| || |||| ||| || | || || || || || || || ||
Sbjct 179599 ATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTG 179658
Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420
|| |||| ||| | || ||| || | || ||||| ||| || || || |
Sbjct 179659 ACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTG 179718
Query 106421 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 106480
| ||||| || | || | | |||| | || ||||| | || ||||| |||
Sbjct 179719 AAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTG 179778
Query 106481 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTC 106540
|||||||| |||||| | | |||||||| | ||| || || |||| |||||| ||
Sbjct 179779 CAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTG 179838
Query 106541 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATG 106600
|| || || | ||||| ||||| ||||| |||||| || ||||||||||||||
Sbjct 179839 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATA 179898
Query 106601 TAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGT 106660
|||| | || ||||| ||||||| || || || || | ||| | | || |
Sbjct 179899 AAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGCGA 179958
Query 106661 ACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 106719
||| | || | ||| | || | |||||| | ||| || ||||| || || ||
Sbjct 179959 ACAGTCTCG-CGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTC 180017
Query 106720 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 106779
||| | |||| ||| || || || || || || | || | ||| | ||
Sbjct 180018 ACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTT 180077
Query 106780 CTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 106839
|| | ||| ||||||||||| ||||| ||||||||||| | | |||||||| | |
Sbjct 180078 GTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGC 180137
Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 106899
|| |||| || | || ||||| || | |||||||| | | || || |||||
Sbjct 180138 GCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTG 180197
Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 106953
||||||||| || |||| |||| | || | ||||| ||| | || | ||
Sbjct 180198 CCATGGCTCGAGGTAGATGGCGAAGGCACC---TGGACGCTTGTTGCCACCCTGGTCGAC 180254
Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013
|||||| || ||| ||| |||| || ||||| ||||| | ||||| ||| || ||
Sbjct 180255 ATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTT 180314
Query 107014 TGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071
|| || |||| || ||| | | || | | || | || | ||||||||
Sbjct 180315 AGTGCCACCGATGTATGAG--CCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCG 180372
Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131
||||| ||| ||||| |||||| | | || || | || || |||| ||| |
Sbjct 180373 CCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTG 180432
Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191
|||||||| || |||| |||||||| ||||| || ||| |||||| || || |||
Sbjct 180433 TCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTG 180492
Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAA 107250
|| | || || | ||||| |||| ||| ||| ||||| | |||||| ||||| |
Sbjct 180493 AACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGAT 180551
Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310
| | || ||||| || ||||| ||||| | || |||||||| | ||||| ||| ||
Sbjct 180552 GGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 180611
>seq23
Length=86929
Score = 104 bits (114), Expect = 3e-17
Identities = 298/454 (66%), Gaps = 16/454 (4%)
Strand=Plus/Plus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| || || |||||||| |||||||||||||| ||| | || |||||| |||||
Sbjct 34492 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTCCATG 34551
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGCACC---CCAACTTGTTTGAG 117098
||||| || || || | |||| | | || || || ||||| ||
Sbjct 34552 AAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC-------AG 34604
Query 117099 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 117158
||||| || | || |||| ||||| | | |||| || |||||| |||| ||
Sbjct 34605 CAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGCAG 34664
Query 117159 ATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 117218
| ||||| |||||||| | |||| | | ||||||||| || || || | | |||
Sbjct 34665 AGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGAT 34724
Query 117219 GGCGTGGATAGTTTCGGTAGTGGGTCTATTA-CGCAAAGTCTTGAAGAGCTCCACGGCAA 117277
|| || || || | |||| | || || || |||||| ||| |
Sbjct 34725 AGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGA-GAAGAGAAGGCAGGCGA 34783
Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337
| || ||| | ||||| || || || || || || || ||||| ||| || ||||
Sbjct 34784 AGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCA 34843
Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397
| ||||| |||||||| | ||| | || | | ||| || ||| ||||||||||||||
Sbjct 34844 TCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCT 34903
Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431
| ||| || || |||| ||||| | ||||||
Sbjct 34904 CAACAGCGGCGAATGCAACGAGGCGGTTGGCGAA 34937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589976766006280
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