Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq530 143 6e-29 seq7 98.7 2e-15 >seq530 Length=496674 Score = 143 bits (158), Expect = 6e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || ||||| ||||| |||| || || | || || ||| Sbjct 171029 ACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 170970 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||||||||| ||||| || || ||||| ||||| || |||||||| Sbjct 170969 AGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGG 170910 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||||||||| || |||||||| || || || ||||| || | ||||| Sbjct 170909 ATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTG 170850 Query 195112 CCTGTCA 195118 || |||| Sbjct 170849 CCGGTCA 170843 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| || || || ||||| || | || |||| || ||||| ||||| Sbjct 171480 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCAGCTG 171421 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || || || ||||| ||||| || || || ||||| || || || Sbjct 171420 CTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTT 171361 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || || ||||| | || ||||| | |||| |||||||| || Sbjct 171360 GGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTCCGGT 171301 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | ||||| Sbjct 171300 AAGAGTCTTGACAAAGATCTGCAT 171277 >seq7 Length=239904 Score = 98.7 bits (108), Expect = 2e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| || | |||||| | ||||| |||||||| Sbjct 256 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTG 197 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||| || |||||||| || || || ||||| || |||||||| || |||||| Sbjct 196 CTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109473824267549