Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq377 100 2e-15
seq504 86.0 5e-11
>seq377
Length=510444
Score = 100 bits (110), Expect = 2e-15
Identities = 157/220 (71%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-AGTGCT--T 550376
|||| || | || ||||||||||| || | || |||| |||| ||| ||| ||
Sbjct 313136 CACCCGAGGAGATCTCATCTATGGTCTTGACCAAGATGAGGGAAACTGCCGAGTCCTACC 313077
Query 550377 TTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCAC 550436
| | ||| || |||| | || || | ||||| || ||||| || || ||||| |
Sbjct 313076 TCGGTGG-CA--CCGTTAACAACGCTGTCGTCACTGTTCCCGCATACTTCAACGACTCGC 313020
Query 550437 AACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCA 550496
||||||| ||||| || |||||||| | ||||| || || || || || ||||| ||||
Sbjct 313019 AACGTCAGGCTACCAAGGATGCTGGTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCA 312960
Query 550497 ATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
| || |||||||| ||||| | || || || ||||| ||
Sbjct 312959 ACGAGCCTACTGCCGCTGCCATCGCCTACGGTCTTGACAA 312920
>seq504
Length=802703
Score = 86.0 bits (94), Expect = 5e-11
Identities = 114/157 (73%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 550381 TGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439
||| |||||| || | | | || || | || || || || || || || ||||| || |
Sbjct 164807 TGGGCAAGAACGTCAAGAACGCCGTCGTCACCGTCCCCGCCTACTTCAACGACTCCCAGC 164748
Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499
|||||||||| || || ||||| | || ||||| || || ||||| ||| | |||| |
Sbjct 164747 GTCAAGCTACCAAGGACGCTGGTCAAATCGCTGGTCTCAACGTTCTCCGTGTCGTCAACG 164688
Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|||| || ||||| || || || || || ||||| ||
Sbjct 164687 AACCCACCGCTGCCGCTCTCGCCTACGGTCTTGACAA 164651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029267072173030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |