Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq88 277 3e-69 seq23 271 1e-67 >seq88 Length=290544 Score = 277 bits (306), Expect = 3e-69 Identities = 1037/1605 (65%), Gaps = 62/1605 (4%) Strand=Plus/Plus Query 212577 GCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCC--CCAGCCGTGCA 212634 |||||| |||| || |||||||||||||| ||||| || || ||| |||||| | Sbjct 178876 GCAGCCATGGTACGGAGATAGTACATGCCAGTCTTGAGACCA--GCCTTCCAGCCAGCAA 178933 Query 212635 TGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTA 212694 |||||| | |||| |||| | || || || | || || || | Sbjct 178934 AGTGCATAGAAGTGA---TCTTGCCCATAGTAGGCTCCT-----TCATG-------TGGA 178978 Query 212695 GGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATAT 212754 ||| || |||||| |||||| ||||| | | | |||||||||||| || ||||| Sbjct 178979 TGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTCAATGATCC 179038 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT-TCTTTGAGGTCCTCTGGGAAGCCG 212813 || ||| |||| |||||| ||||||||| | | |||||| ||||| |||| | | Sbjct 179039 TTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCTTTGTC-TCCTCAGGGATGTTG 179097 Query 212814 GGGATGTTCTGCA--CAGACCCCCTGTGT--ATGGTCAGCTGCAGGCGCATGTCCTCGTT 212869 || || | ||| | ||| || | ||| | | | | ||||| ||| Sbjct 179098 GGAATCCTG-GCAATCGAACCTCCATCGGCGATGATACGGTTCTT---CATGTTCTCAGA 179153 Query 212870 CCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACC 212929 ||| || ||| || | ||| ||||| || |||||||| | |||||| ||||| Sbjct 179154 CCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACC 179213 Query 212930 TGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCC 212989 | ||| || | | || | ||| || ||||| ||||||| || ||||||||| || Sbjct 179214 AGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCC 179273 Query 212990 CAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCC 213049 ||||||||||| |||| ||| || |||||||| || | || || ||| | || || Sbjct 179274 CAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACC 179333 Query 213050 GTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109 |||||| | || | || ||||||||||| | ||| |||| Sbjct 179334 GTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGT-AGGTG------ 179386 Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGA 213169 | || |||||||| || |||| | ||| || | | ||||| || | ||| | Sbjct 179387 --TGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGT 179444 Query 213170 GGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGAT 213229 ||| || ||| | ||||| || | ||||| || | || ||||| | |||||| Sbjct 179445 CTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGAT 179504 Query 213230 GGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCA- 213288 ||| || || || | ||||||||||||| || || ||| ||| || | | Sbjct 179505 GGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAG 179564 Query 213289 TGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGT 213348 |||| |||| |||| || || || || || || || |||||||||| ||| | | || Sbjct 179565 TGCGA-GGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGT 179623 Query 213349 TAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTG 213407 | | | || ||| || | ||||| |||| |||||||||||||| | |||| Sbjct 179624 TGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTG 179682 Query 213408 CGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCC 213467 |||||| | || | ||||| | | || | || | | |||||| | || || Sbjct 179683 CGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAG 179742 Query 213468 TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCT 213527 | ||||| ||||||||| | |||| ||||||||| || ||||| | || | Sbjct 179743 TCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCG 179802 Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| |||||||||||| || |||||||| || ||||||| ||| Sbjct 179803 GTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGG 179862 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||| ||||| || ||||| ||| Sbjct 179863 TTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGT 179922 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGC 213707 | | | || || | ||| || | || | || || | | ||| || | Sbjct 179923 GCCTCAAGGATGGCGTACCAAAGCT-TTTGTGCGCGAACAGTCTCGCGAC----CCTTGT 179977 Query 213708 GTAGC--CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTC 213765 || |||||| ||||| || | | |||||| | || |||| | | || | Sbjct 179978 TCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGC 180037 Query 213766 CCGGACA-GGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATG 213824 | || || | |||| ||||| || |||||| |||| ||| || | || |||| Sbjct 180038 CAGGGCACTCGTTCGGG-CACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATG 180096 Query 213825 AACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCA 213884 || ||||| || | |||||| ||| ||| || || | | | ||| ||| || Sbjct 180097 AAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCG 180156 Query 213885 GAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATG 213944 ||| |||||||| || || ||| |||||| ||| |||||||| ||||| | ||||||| Sbjct 180157 TGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATG 180216 Query 213945 GCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTT 213997 || ||||| || | || | ||||| |||||||| | | | || | || |||| Sbjct 180217 GCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTT 180272 Query 213998 GAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGA 214057 | | | || || | ||| | || || || || |||||| || || | || || || Sbjct 180273 GTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGA 180332 Query 214058 GCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117 ||| | || | | | | || | ||| || || || || ||| ||||||||||| Sbjct 180333 GCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAA 180392 Query 214118 GGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 || ||| | | | || || |||||| | |||||||| || Sbjct 180393 CGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTC 180437 >seq23 Length=86929 Score = 271 bits (300), Expect = 1e-67 Identities = 577/851 (68%), Gaps = 28/851 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || ||| || |||||||| Sbjct 34488 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 34547 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC--AGGCCCATCTGTTC 47952 ||||||| ||||||||||| | || || ||| ||| | ||| ||| | Sbjct 34548 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC----- 34602 Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| | || |||||| |||||||||||| ||||||| || ||||||||| | Sbjct 34603 -AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAG 34661 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 || | || | || | | | ||||||| ||| |||| |||||||| | Sbjct 34662 CAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGAT 34721 Query 48073 AATCTGCT-TAACGCGGGACTCTGAG---GGTTTGTTGCGCAGGTGCTTGGCATAGAGCA 48128 || ||| | || ||||||| | || ||||| ||| | | |||| | Sbjct 34722 GATA-GCTCTGACA---GACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGA---AGAGAA 34774 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||| ||||| |||||| ||| ||||| || ||||||| |||||||||| | Sbjct 34775 GGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTA 34834 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||| ||||| | || | || ||||||||||| || | |||||||| || ||||| Sbjct 34835 GACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGA 34894 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || ||||| || ||| | | |||| | | ||||||||| | Sbjct 34895 AGATACCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGG 34954 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 ||||||| || |||||||| |||||||| |||||| || || | || ||||| Sbjct 34955 AGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGT 35014 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGC-AACATAGGTAGTGAGCAGCTTTGCGTAC 48427 |||||| | | ||| || | || | ||| || || || || ||| | ||| Sbjct 35015 TGAAGAGGTACCTGCGCT-GCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAG 35073 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 |||| ||||| || ||||| || ||| ||||| ||||||||| | ||||| Sbjct 35074 GTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGG 35133 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | || ||||| | ||||||| ||| | || ||||| ||||| || ||||| || || Sbjct 35134 ATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCT 35193 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA-GC--ATTC 48604 || |||||||| ||||| || | ||| |||||||| | | ||||| || ||| Sbjct 35194 GCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTC 35253 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | || | ||| ||| ||||| | || || | |||||||| || || || Sbjct 35254 CAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCC 35313 Query 48665 TTTTTGTACAT 48675 || |||||||| Sbjct 35314 TTCTTGTACAT 35324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931526430644480