Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq88 253 4e-62 seq23 237 3e-57 >seq88 Length=290544 Score = 253 bits (280), Expect = 4e-62 Identities = 959/1480 (65%), Gaps = 55/1480 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || ||||| |||||||||||||| ||||| ||||||| |||| || ||| Sbjct 179485 GTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCT 179544 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || ||| || | || || | ||| | ||||| || || || || || |||||| Sbjct 179545 GACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCG 179604 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTC 221595 ||||| | ||| | |||| ||||| || ||| || || || |||||| || Sbjct 179605 ATGGGTCGGTGGCGGAAGTTGCT-GCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTC 179663 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | ||||| | ||| | |||| ||| | || ||| ||||||| | Sbjct 179664 GATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCT------T 179717 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 ||| | ||| ||||| | | || | || ||||||| ||||||| || Sbjct 179718 GAAGTCAAACACGCCGGCCTTGTAG------TCGACAAAAGAAGGCAGGGCAAGAGAAGC 179771 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 || ||| || || || ||||| || ||| |||| | ||||| || || ||||| Sbjct 179772 CAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTT 179831 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 | || |||||| || |||| || || || |||||| ||| |||||||||||| Sbjct 179832 GGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTA 179891 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 |||||||||||| |||||||| ||| ||| | || || || ||| || | | Sbjct 179892 GAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTG 179951 Query 221896 GGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCT---TTTCATACCCG--GTATAGAGC 221950 |||| || ||| || ||| ||| | ||| | || || | ||| ||||| Sbjct 179952 TGCGCGAACAGTC-TCGCGAC-----CCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGC 180005 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | | || | ||||||||| | ||| | ||||| || ||| | || |||||||| Sbjct 180006 TT--CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGT 180063 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 |||||| |||||||| || | || |||||||||||| || |||||||| || | Sbjct 180064 GTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 180123 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 |||||||| | | || ||||||| ||||| ||| || | ||| || | || || Sbjct 180124 AAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCA 180183 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || | |||||||||||| ||||| || |||| ||| | || || || |||||||||||| Sbjct 180184 AAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCA 180243 Query 222191 CCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 ||||| || | ||| ||| | |||| | | || || | || | || || || Sbjct 180244 CCCTGGTCGA-CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATT 180302 Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA--GGTTACTGGCAGAC 222307 ||| ||||| ||||| ||||| | || || | | | | | | | Sbjct 180303 AGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG-- 180360 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 | ||| ||||| || ||| || ||||||| || ||| ||||||| ||||| ||| Sbjct 180361 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 180420 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT-TTGGT 222426 || || || ||||||||| | || | || || || |||||||| || | | |||| Sbjct 180421 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT 180480 Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486 | | ||||| |||| ||| || ||||||||| ||||| |||||| || Sbjct 180481 -GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTC 180539 Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTA 222546 ||| ||||| | | | | |||||| || |||||||| | || | |||| Sbjct 180540 GTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAG 180599 Query 222547 CATGTACTGGGGCCTCTCCACAGGACCCTTGGAG---CTGGAGAGCAGGTACGATTTTTC 222603 ||||| || || | ||| | || ||||| | || ||| || || || ||| Sbjct 180600 CATGTGTTGTGGGCGCTCGGC--GA-CCTTGCCGTTTATGCGGAGGAGATATGAACGTTC 180656 Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTC 222663 || |||||||| |||||| | | | || ||||| | | ||| || | || | || Sbjct 180657 GAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 180716 Query 222664 CAGCTCCGACTT-GTGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCGT 222722 |||| || ||| ||| | | | | || | | | | | ||||| | | || | Sbjct 180717 GAGCT-CGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGG--GTTG 180773 Query 222723 TCTCTTT--GGTGTCGGGGTTAACGTTGTGGTACAG--CTGCCACATGGCATCAGAGA-A 222777 ||||||| | | | |||||| || | || |||||| || | || || ||||| | Sbjct 180774 TCTCTTTCCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTAC----CACGAGAGAGA 180829 Query 222778 CGTG-TCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCAT 222836 || | ||||||||||| ||||| || || ||||| || | || | ||| | | Sbjct 180830 ATTGCTTCTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGT 180889 Query 222837 AGTCAGGGTGCACGGTGGTCATGCTGGCTAGGGTCTGAGC 222876 |||| || || |||||||||| |||| ||||| ||| Sbjct 180890 AGTCGGGATGTGTGGTGGTCATGTAGGCTGCGGTCTCAGC 180929 >seq23 Length=86929 Score = 237 bits (262), Expect = 3e-57 Identities = 568/855 (66%), Gaps = 26/855 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || ||||||||| || ||||| || || || Sbjct 35330 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 35271 Query 25540 AAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAAGTA 25595 |||||| | ||| |||| || || ||| | | ||||||| || | ||| || | Sbjct 35270 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGC-GCTTCTTCATCTCCCA 35212 Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655 ||| | || ||||| |||||||| ||||| || || |||||||| || ||| |||| Sbjct 35211 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATT 35152 Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | || ||||| || | ||||| || |||||||||||||| || || || Sbjct 35151 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 35092 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || || ||||| ||| || | ||| | || ||||||| || ||| | Sbjct 35091 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGA----GCCCA 35036 Query 25776 GAGAGATCGG----CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 || | | || || |||||||| |||| ||| ||||| | |||||| Sbjct 35035 AGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCG 34976 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| || |||||| | | ||| | | || || | | | || || || || | Sbjct 34975 ACTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCAT 34916 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 | || ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| Sbjct 34915 TCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGA 34856 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||||| || || ||||||||||||||| | |||||||| Sbjct 34855 AGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCA 34796 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071 | |||| || || |||||||| |||| | | || | | |||| || | || Sbjct 34795 TGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAG---AACAAGCCCAGCCCAG 34739 Query 26072 AGACCGTCTACAG-TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130 || | ||| | || |||||||| || || || ||||| ||| ||||||| Sbjct 34738 AGTCTGTC-AGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGAC 34680 Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190 | ||||||||| | |||||| |||||||||| |||| Sbjct 34679 GCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTC 34620 Query 26191 GTGGCCGACCATCTGCTGT--GCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAA 26246 || || |||| |||||||| ||| || || || || ||||| |||| | || Sbjct 34619 GTCGCTGACCGTCTGCTGTTGGCC--CTCGGCAACGTCAAGGTCTAC--CACGCCACCAA 34564 Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306 ||| |||||||| ||||| ||||| || ||| || |||||||||||||| || ||| | Sbjct 34563 CCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCG 34504 Query 26307 GGTCGGCGACTATCA 26321 ||||||||||| || Sbjct 34503 CGTCGGCGACTACCA 34489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838449023680