Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq88 253 4e-62
seq23 237 3e-57
>seq88
Length=290544
Score = 253 bits (280), Expect = 4e-62
Identities = 959/1480 (65%), Gaps = 55/1480 (4%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476
|| || ||||| |||||||||||||| ||||| ||||||| |||| || |||
Sbjct 179485 GTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCT 179544
Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
|| ||| || | || || | ||| | ||||| || || || || || ||||||
Sbjct 179545 GACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCG 179604
Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTC 221595
||||| | ||| | |||| ||||| || ||| || || || |||||| ||
Sbjct 179605 ATGGGTCGGTGGCGGAAGTTGCT-GCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTC 179663
Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655
||| | ||||| | ||| | |||| ||| | || ||| ||||||| |
Sbjct 179664 GATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCT------T 179717
Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715
||| | ||| ||||| | | || | || ||||||| ||||||| ||
Sbjct 179718 GAAGTCAAACACGCCGGCCTTGTAG------TCGACAAAAGAAGGCAGGGCAAGAGAAGC 179771
Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775
|| ||| || || || ||||| || ||| |||| | ||||| || || |||||
Sbjct 179772 CAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTT 179831
Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835
| || |||||| || |||| || || || |||||| ||| ||||||||||||
Sbjct 179832 GGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTA 179891
Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895
|||||||||||| |||||||| ||| ||| | || || || ||| || | |
Sbjct 179892 GAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTG 179951
Query 221896 GGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCT---TTTCATACCCG--GTATAGAGC 221950
|||| || ||| || ||| ||| | ||| | || || | ||| |||||
Sbjct 179952 TGCGCGAACAGTC-TCGCGAC-----CCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGC 180005
Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010
| | || | ||||||||| | ||| | ||||| || ||| | || ||||||||
Sbjct 180006 TT--CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGT 180063
Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070
|||||| |||||||| || | || |||||||||||| || |||||||| || |
Sbjct 180064 GTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 180123
Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130
|||||||| | | || ||||||| ||||| ||| || | ||| || | || ||
Sbjct 180124 AAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCA 180183
Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190
|| | |||||||||||| ||||| || |||| ||| | || || || ||||||||||||
Sbjct 180184 AAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCA 180243
Query 222191 CCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249
||||| || | ||| ||| | |||| | | || || | || | || || ||
Sbjct 180244 CCCTGGTCGA-CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATT 180302
Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA--GGTTACTGGCAGAC 222307
||| ||||| ||||| ||||| | || || | | | | | | |
Sbjct 180303 AGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG-- 180360
Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367
| ||| ||||| || ||| || ||||||| || ||| ||||||| ||||| |||
Sbjct 180361 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 180420
Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT-TTGGT 222426
|| || || ||||||||| | || | || || || |||||||| || | | ||||
Sbjct 180421 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT 180480
Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486
| | ||||| |||| ||| || ||||||||| ||||| |||||| ||
Sbjct 180481 -GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTC 180539
Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTA 222546
||| ||||| | | | | |||||| || |||||||| | || | ||||
Sbjct 180540 GTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAG 180599
Query 222547 CATGTACTGGGGCCTCTCCACAGGACCCTTGGAG---CTGGAGAGCAGGTACGATTTTTC 222603
||||| || || | ||| | || ||||| | || ||| || || || |||
Sbjct 180600 CATGTGTTGTGGGCGCTCGGC--GA-CCTTGCCGTTTATGCGGAGGAGATATGAACGTTC 180656
Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTC 222663
|| |||||||| |||||| | | | || ||||| | | ||| || | || | ||
Sbjct 180657 GAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 180716
Query 222664 CAGCTCCGACTT-GTGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCGT 222722
|||| || ||| ||| | | | | || | | | | | ||||| | | || |
Sbjct 180717 GAGCT-CGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGG--GTTG 180773
Query 222723 TCTCTTT--GGTGTCGGGGTTAACGTTGTGGTACAG--CTGCCACATGGCATCAGAGA-A 222777
||||||| | | | |||||| || | || |||||| || | || || ||||| |
Sbjct 180774 TCTCTTTCCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTAC----CACGAGAGAGA 180829
Query 222778 CGTG-TCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCAT 222836
|| | ||||||||||| ||||| || || ||||| || | || | ||| | |
Sbjct 180830 ATTGCTTCTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGT 180889
Query 222837 AGTCAGGGTGCACGGTGGTCATGCTGGCTAGGGTCTGAGC 222876
|||| || || |||||||||| |||| ||||| |||
Sbjct 180890 AGTCGGGATGTGTGGTGGTCATGTAGGCTGCGGTCTCAGC 180929
>seq23
Length=86929
Score = 237 bits (262), Expect = 3e-57
Identities = 568/855 (66%), Gaps = 26/855 (3%)
Strand=Plus/Minus
Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539
||| |||||||||||||||| | || ||||||||| || ||||| || || ||
Sbjct 35330 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 35271
Query 25540 AAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAAGTA 25595
|||||| | ||| |||| || || ||| | | ||||||| || | ||| || |
Sbjct 35270 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGC-GCTTCTTCATCTCCCA 35212
Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655
||| | || ||||| |||||||| ||||| || || |||||||| || ||| ||||
Sbjct 35211 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATT 35152
Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715
| | || ||||| || | ||||| || |||||||||||||| || || ||
Sbjct 35151 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 35092
Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775
|| || ||||| ||| || | ||| | || ||||||| || ||| |
Sbjct 35091 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGA----GCCCA 35036
Query 25776 GAGAGATCGG----CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831
|| | | || || |||||||| |||| ||| ||||| | ||||||
Sbjct 35035 AGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCG 34976
Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891
|||||| || |||||| | | ||| | | || || | | | || || || || |
Sbjct 34975 ACTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCAT 34916
Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951
| || ||||| ||||| ||||| ||||||||||| || || |||||||||||||||||
Sbjct 34915 TCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGA 34856
Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011
|| || |||||||| || || ||||||||||||||| | ||||||||
Sbjct 34855 AGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCA 34796
Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071
| |||| || || |||||||| |||| | | || | | |||| || | ||
Sbjct 34795 TGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAG---AACAAGCCCAGCCCAG 34739
Query 26072 AGACCGTCTACAG-TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130
|| | ||| | || |||||||| || || || ||||| ||| |||||||
Sbjct 34738 AGTCTGTC-AGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGAC 34680
Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190
| ||||||||| | |||||| |||||||||| ||||
Sbjct 34679 GCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTC 34620
Query 26191 GTGGCCGACCATCTGCTGT--GCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAA 26246
|| || |||| |||||||| ||| || || || || ||||| |||| | ||
Sbjct 34619 GTCGCTGACCGTCTGCTGTTGGCC--CTCGGCAACGTCAAGGTCTAC--CACGCCACCAA 34564
Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306
||| |||||||| ||||| ||||| || ||| || |||||||||||||| || ||| |
Sbjct 34563 CCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCG 34504
Query 26307 GGTCGGCGACTATCA 26321
||||||||||| ||
Sbjct 34503 CGTCGGCGACTACCA 34489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928838449023680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |