Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq511 118 3e-21 seq527 105 2e-17 seq345 86.0 2e-11 >seq511 Length=373700 Score = 118 bits (130), Expect = 3e-21 Identities = 385/588 (65%), Gaps = 24/588 (4%) Strand=Plus/Plus Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471 ||| || ||| |||||| || || |||| ||||| || || | | || || |||| Sbjct 234670 ACCGCAGATATCACACACGTGCACCGTGTACGCATCCGAAACGGTAAAGAGACGTTCCTT 234729 Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531 ||| | |||||||| | ||||||||||||||| ||||| || |||||||| || Sbjct 234730 CAAAAAGGCGGCGGCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAG 234789 Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC--- 251588 |||||| || | ||| | ||||||| ||||||| ||||| ||| | || ||||| Sbjct 234790 ACCACCGTCCCTAGCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAGCGGACCACG 234849 Query 251589 -GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGG 251647 | ||||| || ||| || | ||||||||| | ||||| |||||| ||| | Sbjct 234850 AGCACGAGCG----TGAATCTTGTCGTCGACCATATGCCTTAGACGTTGGTAGTATGTAG 234905 Query 251648 GACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGT 251707 | || | |||||| | |||| | || ||| || | | || ||||| | ||| Sbjct 234906 GTCCCAAGAAGATTTGTGTTCGCATCTTCTTTCCCGTGTGGCCATTGTACATGATCTCGA 234965 Query 251708 TTCCATTAGATTCATAACCAAGTTTCTGTAGC--TCTGAAGCAATATCACCAATCTTGAA 251765 ||| || || || | || ||| | | | || | | | | ||| Sbjct 234966 AACCACGCTTTTGGTAGCCGGCATCCTCAAGCAGACCGGA-CACT-TGGTCGACGGTGAT 235023 Query 251766 TTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAAT--CAAC-ACTTTGCCTAA 251822 | | | || ||| |||| || | | ||| | ||| || | || ||| | Sbjct 235024 ATCGGTGAAGGGTGTGGCGTCACCCTCTTGTCCCGT---AATGGCACCGACCTTGGAGAG 235080 Query 251823 AAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGAT 251882 || ||| ||| ||||| || ||||||||| ||||| || ||||| |||||||| Sbjct 235081 CAGACACTCGATCAAATGGGCAATTGTCATACGAGACGGAATGGCGTGGGGGTTGATGAT 235140 Query 251883 GATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTT 251939 | || ||| | ||||| || | ||| |||||||| ||||| | || || | Sbjct 235141 CAGATCCGGTGTGAGTCCCTCCCTGGAGAATGGCATATC---TTCCTGGCGGTAGGTGAT 235197 Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| ||||||||||| |||||||||||| ||||| |||||||| Sbjct 235198 ACCAATGGTTCCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 235245 Score = 89.7 bits (98), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 8/145 (6%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 |||||||||||||||||||||||||||||||| || || | |||||||||||| || | Sbjct 234743 GCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAGACCACCGTCCCTA 234802 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAA----CAGTTCTTGGACCCTGAGCACGATA 233388 | | ||||| ||| | || ||||| | || ||| ||||| |||||||| Sbjct 234803 GCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAG----CGGACCACGAGCACGAGC 234858 Query 233389 ATTAATTTTATCTTTAACCATATGC 233413 | ||| || || | ||||||||| Sbjct 234859 GTGAATCTTGTCGTCGACCATATGC 234883 >seq527 Length=259400 Score = 105 bits (116), Expect = 2e-17 Identities = 171/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| ||||| | ||||| | |||||| || || |||||||| | || || Sbjct 132368 CATAACATCTTCGAGCGCCTTGACGAGACGACGTTGGATGTAACCAGTCTCGGCAGTCTT 132427 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG- 302683 || ||||||||||| | ||| |||||||| |||| || |||||||| | ||||| Sbjct 132428 GACTGCTGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGA---ATTCCGA 132484 Query 302684 -GTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741 | || || || | || ||||| | || ||||||||||| | || ||||| | ||| Sbjct 132485 AGGGGTGAGACCGCGAAGGTAGGAGTTTTCGACGAAACCACGGGATTCTGGCGAGTAGTC 132544 Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATC 302801 | ||| | || || ||||| ||||||| || |||| || || ||||||| ||| || Sbjct 132545 GTCCTTTGAGAAATGCGGCAGTGTCCTGTACTTGAAGCCATAGGGAATACGCTGTCCTTC 132604 Query 302802 AAC 302804 || Sbjct 132605 CAC 132607 >seq345 Length=740673 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 353938 TCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGA 353997 ||||||||||| ||| | |||||| | ||| || || || || ||||| || Sbjct 345264 TCGGGGCAGAGAGCACCAACGAATTCTTCGTTATGCGAAATCATGATGACACCACCCTTG 345205 Query 353998 TAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGT 354057 ||| ||| || |||||| |||| |||||||| ||||| | ||| || || ||| Sbjct 345204 TAGTCACGAATGGCAACAGCGAGACCACCGAGCGAGTCGCGGTCCAAGAAGTTGGTGGGT 345145 Query 354058 TCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACC 354117 ||||| || | || | ||||| | ||||||| || | || || || ||||| ||| Sbjct 345144 TCGTCGAGAACGAGGAGATGCGGGTTGTTCCACATGGCACCGGCAAGCACAACCTTGACC 345085 Query 354118 TTCTGTCCGCCTGATAG 354134 |||||||| || || || Sbjct 345084 TTCTGTCCTCCGGAAAG 345068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471807284858339