Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq511 118 3e-21
seq527 105 2e-17
seq345 86.0 2e-11
>seq511
Length=373700
Score = 118 bits (130), Expect = 3e-21
Identities = 385/588 (65%), Gaps = 24/588 (4%)
Strand=Plus/Plus
Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471
||| || ||| |||||| || || |||| ||||| || || | | || || ||||
Sbjct 234670 ACCGCAGATATCACACACGTGCACCGTGTACGCATCCGAAACGGTAAAGAGACGTTCCTT 234729
Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531
||| | |||||||| | ||||||||||||||| ||||| || |||||||| ||
Sbjct 234730 CAAAAAGGCGGCGGCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAG 234789
Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC--- 251588
|||||| || | ||| | ||||||| ||||||| ||||| ||| | || |||||
Sbjct 234790 ACCACCGTCCCTAGCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAGCGGACCACG 234849
Query 251589 -GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGG 251647
| ||||| || ||| || | ||||||||| | ||||| |||||| ||| |
Sbjct 234850 AGCACGAGCG----TGAATCTTGTCGTCGACCATATGCCTTAGACGTTGGTAGTATGTAG 234905
Query 251648 GACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGT 251707
| || | |||||| | |||| | || ||| || | | || ||||| | |||
Sbjct 234906 GTCCCAAGAAGATTTGTGTTCGCATCTTCTTTCCCGTGTGGCCATTGTACATGATCTCGA 234965
Query 251708 TTCCATTAGATTCATAACCAAGTTTCTGTAGC--TCTGAAGCAATATCACCAATCTTGAA 251765
||| || || || | || ||| | | | || | | | | |||
Sbjct 234966 AACCACGCTTTTGGTAGCCGGCATCCTCAAGCAGACCGGA-CACT-TGGTCGACGGTGAT 235023
Query 251766 TTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAAT--CAAC-ACTTTGCCTAA 251822
| | | || ||| |||| || | | ||| | ||| || | || ||| |
Sbjct 235024 ATCGGTGAAGGGTGTGGCGTCACCCTCTTGTCCCGT---AATGGCACCGACCTTGGAGAG 235080
Query 251823 AAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGAT 251882
|| ||| ||| ||||| || ||||||||| ||||| || ||||| ||||||||
Sbjct 235081 CAGACACTCGATCAAATGGGCAATTGTCATACGAGACGGAATGGCGTGGGGGTTGATGAT 235140
Query 251883 GATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTT 251939
| || ||| | ||||| || | ||| |||||||| ||||| | || || |
Sbjct 235141 CAGATCCGGTGTGAGTCCCTCCCTGGAGAATGGCATATC---TTCCTGGCGGTAGGTGAT 235197
Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||| ||||||||||| |||||||||||| ||||| ||||||||
Sbjct 235198 ACCAATGGTTCCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 235245
Score = 89.7 bits (98), Expect = 2e-12
Identities = 107/145 (74%), Gaps = 8/145 (6%)
Strand=Plus/Plus
Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332
|||||||||||||||||||||||||||||||| || || | |||||||||||| || |
Sbjct 234743 GCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAGACCACCGTCCCTA 234802
Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAA----CAGTTCTTGGACCCTGAGCACGATA 233388
| | ||||| ||| | || ||||| | || ||| ||||| ||||||||
Sbjct 234803 GCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAG----CGGACCACGAGCACGAGC 234858
Query 233389 ATTAATTTTATCTTTAACCATATGC 233413
| ||| || || | |||||||||
Sbjct 234859 GTGAATCTTGTCGTCGACCATATGC 234883
>seq527
Length=259400
Score = 105 bits (116), Expect = 2e-17
Identities = 171/243 (70%), Gaps = 6/243 (2%)
Strand=Plus/Plus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||||| ||||| | ||||| | |||||| || || |||||||| | || ||
Sbjct 132368 CATAACATCTTCGAGCGCCTTGACGAGACGACGTTGGATGTAACCAGTCTCGGCAGTCTT 132427
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG- 302683
|| ||||||||||| | ||| |||||||| |||| || |||||||| | |||||
Sbjct 132428 GACTGCTGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGA---ATTCCGA 132484
Query 302684 -GTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741
| || || || | || ||||| | || ||||||||||| | || ||||| | |||
Sbjct 132485 AGGGGTGAGACCGCGAAGGTAGGAGTTTTCGACGAAACCACGGGATTCTGGCGAGTAGTC 132544
Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATC 302801
| ||| | || || ||||| ||||||| || |||| || || ||||||| ||| ||
Sbjct 132545 GTCCTTTGAGAAATGCGGCAGTGTCCTGTACTTGAAGCCATAGGGAATACGCTGTCCTTC 132604
Query 302802 AAC 302804
||
Sbjct 132605 CAC 132607
>seq345
Length=740673
Score = 86.0 bits (94), Expect = 2e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 353938 TCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGA 353997
||||||||||| ||| | |||||| | ||| || || || || ||||| ||
Sbjct 345264 TCGGGGCAGAGAGCACCAACGAATTCTTCGTTATGCGAAATCATGATGACACCACCCTTG 345205
Query 353998 TAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGT 354057
||| ||| || |||||| |||| |||||||| ||||| | ||| || || |||
Sbjct 345204 TAGTCACGAATGGCAACAGCGAGACCACCGAGCGAGTCGCGGTCCAAGAAGTTGGTGGGT 345145
Query 354058 TCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACC 354117
||||| || | || | ||||| | ||||||| || | || || || ||||| |||
Sbjct 345144 TCGTCGAGAACGAGGAGATGCGGGTTGTTCCACATGGCACCGGCAAGCACAACCTTGACC 345085
Query 354118 TTCTGTCCGCCTGATAG 354134
|||||||| || || ||
Sbjct 345084 TTCTGTCCTCCGGAAAG 345068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471807284858339
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |