Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq366 149 8e-30 seq23 143 3e-28 seq88 140 4e-27 seq418 102 1e-15 seq34 86.0 8e-11 >seq366 Length=209556 Score = 149 bits (164), Expect = 8e-30 Identities = 137/171 (80%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| || |||| ||| | ||||| ||| | || || ||| | |||||||||| Sbjct 46520 GTGGGACCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTTTTCGAGATCATCCTCGCCG 46462 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| ||||||||| |||| || || | || |||||| | || || ||||||| Sbjct 46461 CCAACTACCTGGACATCAAGGCTCTCCTTGACGTAGGATGCAAGACCGTCGCGAACATGA 46402 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| ||||| |||||||| |||||||| |||||| || ||| Sbjct 46401 TCAAGGGCAAGTCACCCGATGAGATCCGTAAGACCTTCAACATCCAGAACG 46351 >seq23 Length=86929 Score = 143 bits (158), Expect = 3e-28 Identities = 223/316 (71%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| |||||| |||||| ||||||||||| || | || || || Sbjct 34483 GCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATG 34542 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | | |||| ||| || ||||| | | Sbjct 34543 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC 34602 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct 34603 AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGC 34662 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||||||| ||||| | ||| ||||||||||| || |||| Sbjct 34663 AGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATG 34722 Query 868931 ATCTGCCTG---GGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || ||| | | | | ||| ||||||||| |||| | | | |||| |||||| Sbjct 34723 ATAGCTCTGACAGACTC-TGGGC--TGGGCTTGTTCTCGAGGAGAGAGAAGAGAAGGCAG 34779 Query 868988 GCAAAGTCGCAGTGCA 869003 || |||||| ||||| Sbjct 34780 GCGAAGTCGGTGTGCA 34795 Score = 104 bits (114), Expect = 3e-16 Identities = 177/256 (69%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | |||||| || ||| ||||| ||||| ||| | |||| | | ||| Sbjct 35080 GAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGT 35139 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | ||| || | | ||||||||| || ||||| ||| ||| ||||| Sbjct 35140 ACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAAG 35199 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC-----CCAGT 869807 || || |||||||| ||| ||| ||||||||| ||| |||| || | ||||| Sbjct 35200 AAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAG--ACGCTTGTTCCAGT 35257 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | ||| | |||||| | |||||| |||||||||| || ||||||||||| | Sbjct 35258 CGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCT 35317 Query 869868 TGTACATCTCCCATAC 869883 ||||||||| ||| || Sbjct 35318 TGTACATCTGCCAGAC 35333 Score = 96.9 bits (106), Expect = 4e-14 Identities = 197/289 (68%), Gaps = 13/289 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||| | |||||| || | || |||||||| || ||||||||| Sbjct 34798 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 34857 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| | |||| || ||| ||||| ||||| || ||||| || Sbjct 34858 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 34917 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356 | | ||| || | ||| || ||| ||| | ||||| |||||| || ||| Sbjct 34918 GCAACGAGGCGGTTGGCGAA--TGTGGAG----TTCTTGTCGGAGATCCATCGCAGGGCC 34971 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||||||||| || | | | || | ||||||||||| ||||||| ||| Sbjct 34972 CAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGT--ACCTGC 35029 Query 869417 TCGGC--CGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | || || || | | || |||||||| || || || |||||||| Sbjct 35030 GCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAGGTCTC 35078 >seq88 Length=290544 Score = 140 bits (154), Expect = 4e-27 Identities = 211/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| ||||| || |||| ||| | || ||||||||||| | ||| || || || Sbjct 180246 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGA 180305 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| | | ||| | ||| | || || | |||| || | ||| Sbjct 180306 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 180365 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | ||| || ||||| |||||||| ||||| || Sbjct 180366 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 180425 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| | ||| ||||| ||||| |||| || | ||||| Sbjct 180426 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 180485 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| | ||| |||| || ||||| ||| | |||||| ||||||||| Sbjct 180486 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 180545 Score = 105 bits (116), Expect = 8e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| ||||||||| ||||||| ||||| ||||| ||||| || ||| ||||||||| Sbjct 180093 CATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTT 180152 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 |||||||||||| ||||| || || | | | ||| |||||||| ||||| ||||| Sbjct 180153 GCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTA 180212 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | ||| ||||| || |||||| ||| || Sbjct 180213 GATGGCGAAGGCACCTGGACGCTTGTTGCCACC 180245 >seq418 Length=236260 Score = 102 bits (112), Expect = 1e-15 Identities = 161/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1852026 CGTCGGGATCGTCGAG---GCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGC 1852082 |||| | |||||| || | ||||||||||| ||| || | ||||||||| || | Sbjct 21550 CGTCCGCATCGTCTAGTACGTCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTTCCTC 21491 Query 1852083 TCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGA 1852142 | || || || || || | ||||| | || ||| ||||| | ||||||| Sbjct 21490 CTT--GT-AGACCGGGAACCATGGGGTTCATCAAGTGTGCGCGCTCCTTGTAGCCGATCT 21434 Query 1852143 CCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGG 1852202 || ||| || || | || || |||||||||||||| || ||||||||| Sbjct 21433 TGGGAAGGACATCCTTTGCGAGCGCGAAGATCTTGCGCTGGTCTACACCTCCAAACTGGA 21374 Query 1852203 CGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250 |||| || ||||||| ||||||||| |||||||||||||| ||||||| Sbjct 21373 CGTCTACATCGAGGTACTGCTCGTCAAGGGCCTGCATGAGTGGGTAGA 21326 >seq34 Length=236775 Score = 86.0 bits (94), Expect = 8e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 |||||||||| || ||||| ||||| ||||| | | || ||||| | || | Sbjct 96510 AGGACAGCATAGGTGGCACAGTGACTTGCGTCATAAGAGGCTGCCCAACAGGCTTGGGAG 96451 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 | || |||||||||||| | || ||| | | | || |||||||||||||| ||||| | Sbjct 96450 AACCATGCTTTGACAAGCTGGAAGCCAAGTTGGGACATGCCATGCTGTCGATACCGGCGA 96391 Query 19165 CCAAGGGATTCGAGATTGGC 19184 ||||||| || ||||| ||| Sbjct 96390 CCAAGGGGTTTGAGATCGGC 96371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107094310618399