Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq366 149 8e-30
seq23 143 3e-28
seq88 140 4e-27
seq418 102 1e-15
seq34 86.0 8e-11
>seq366
Length=209556
Score = 149 bits (164), Expect = 8e-30
Identities = 137/171 (80%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189
||||||| || |||| ||| | ||||| ||| | || || ||| | ||||||||||
Sbjct 46520 GTGGGACCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTTTTCGAGATCATCCTCGCCG 46462
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| ||||||||| |||| || || | || |||||| | || || |||||||
Sbjct 46461 CCAACTACCTGGACATCAAGGCTCTCCTTGACGTAGGATGCAAGACCGTCGCGAACATGA 46402
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||| ||||| |||||||| |||||||| |||||| || |||
Sbjct 46401 TCAAGGGCAAGTCACCCGATGAGATCCGTAAGACCTTCAACATCCAGAACG 46351
>seq23
Length=86929
Score = 143 bits (158), Expect = 3e-28
Identities = 223/316 (71%), Gaps = 6/316 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| |||||| |||||| ||||||||||| || | || || ||
Sbjct 34483 GCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATG 34542
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | | |||| ||| || ||||| | |
Sbjct 34543 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC 34602
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 34603 AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGC 34662
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||||||| ||||| | ||| ||||||||||| || ||||
Sbjct 34663 AGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATG 34722
Query 868931 ATCTGCCTG---GGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987
|| ||| | | | | ||| ||||||||| |||| | | | |||| ||||||
Sbjct 34723 ATAGCTCTGACAGACTC-TGGGC--TGGGCTTGTTCTCGAGGAGAGAGAAGAGAAGGCAG 34779
Query 868988 GCAAAGTCGCAGTGCA 869003
|| |||||| |||||
Sbjct 34780 GCGAAGTCGGTGTGCA 34795
Score = 104 bits (114), Expect = 3e-16
Identities = 177/256 (69%), Gaps = 7/256 (3%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||| | |||||| || ||| ||||| ||||| ||| | |||| | | |||
Sbjct 35080 GAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGT 35139
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || | ||| || | | ||||||||| || ||||| ||| ||| |||||
Sbjct 35140 ACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAAG 35199
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC-----CCAGT 869807
|| || |||||||| ||| ||| ||||||||| ||| |||| || | |||||
Sbjct 35200 AAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAG--ACGCTTGTTCCAGT 35257
Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867
| ||| | |||||| | |||||| |||||||||| || ||||||||||| |
Sbjct 35258 CGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCT 35317
Query 869868 TGTACATCTCCCATAC 869883
||||||||| ||| ||
Sbjct 35318 TGTACATCTGCCAGAC 35333
Score = 96.9 bits (106), Expect = 4e-14
Identities = 197/289 (68%), Gaps = 13/289 (4%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| ||| ||| | |||||| || | || |||||||| || |||||||||
Sbjct 34798 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 34857
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|||||||| ||||||| | |||| || ||| ||||| ||||| || ||||| ||
Sbjct 34858 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 34917
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356
| | ||| || | ||| || ||| ||| | ||||| |||||| || |||
Sbjct 34918 GCAACGAGGCGGTTGGCGAA--TGTGGAG----TTCTTGTCGGAGATCCATCGCAGGGCC 34971
Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416
||||||||||| || | | | || | ||||||||||| ||||||| |||
Sbjct 34972 CAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGT--ACCTGC 35029
Query 869417 TCGGC--CGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| || || || | | || |||||||| || || || ||||||||
Sbjct 35030 GCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAGGTCTC 35078
>seq88
Length=290544
Score = 140 bits (154), Expect = 4e-27
Identities = 211/300 (70%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||| ||||| || |||| ||| | || ||||||||||| | ||| || || ||
Sbjct 180246 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGA 180305
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| | | ||| | ||| | || || | |||| || | |||
Sbjct 180306 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 180365
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| ||||| || | ||||||||| | ||| || ||||| |||||||| ||||| ||
Sbjct 180366 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 180425
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| | ||| ||||| ||||| |||| || | |||||
Sbjct 180426 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 180485
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||| | ||| |||| || ||||| ||| | |||||| |||||||||
Sbjct 180486 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 180545
Score = 105 bits (116), Expect = 8e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507
||| ||||||||| ||||||| ||||| ||||| ||||| || ||| |||||||||
Sbjct 180093 CATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTT 180152
Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567
|||||||||||| ||||| || || | | | ||| |||||||| ||||| |||||
Sbjct 180153 GCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTA 180212
Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
| ||| ||||| || |||||| ||| ||
Sbjct 180213 GATGGCGAAGGCACCTGGACGCTTGTTGCCACC 180245
>seq418
Length=236260
Score = 102 bits (112), Expect = 1e-15
Identities = 161/228 (71%), Gaps = 6/228 (3%)
Strand=Plus/Minus
Query 1852026 CGTCGGGATCGTCGAG---GCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGC 1852082
|||| | |||||| || | ||||||||||| ||| || | ||||||||| || |
Sbjct 21550 CGTCCGCATCGTCTAGTACGTCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTTCCTC 21491
Query 1852083 TCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGA 1852142
| || || || || || | ||||| | || ||| ||||| | |||||||
Sbjct 21490 CTT--GT-AGACCGGGAACCATGGGGTTCATCAAGTGTGCGCGCTCCTTGTAGCCGATCT 21434
Query 1852143 CCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGG 1852202
|| ||| || || | || || |||||||||||||| || |||||||||
Sbjct 21433 TGGGAAGGACATCCTTTGCGAGCGCGAAGATCTTGCGCTGGTCTACACCTCCAAACTGGA 21374
Query 1852203 CGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250
|||| || ||||||| ||||||||| |||||||||||||| |||||||
Sbjct 21373 CGTCTACATCGAGGTACTGCTCGTCAAGGGCCTGCATGAGTGGGTAGA 21326
>seq34
Length=236775
Score = 86.0 bits (94), Expect = 8e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104
|||||||||| || ||||| ||||| ||||| | | || ||||| | || |
Sbjct 96510 AGGACAGCATAGGTGGCACAGTGACTTGCGTCATAAGAGGCTGCCCAACAGGCTTGGGAG 96451
Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164
| || |||||||||||| | || ||| | | | || |||||||||||||| ||||| |
Sbjct 96450 AACCATGCTTTGACAAGCTGGAAGCCAAGTTGGGACATGCCATGCTGTCGATACCGGCGA 96391
Query 19165 CCAAGGGATTCGAGATTGGC 19184
||||||| || ||||| |||
Sbjct 96390 CCAAGGGGTTTGAGATCGGC 96371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107094310618399
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |