Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq88 205 8e-48 seq530 113 4e-20 >seq88 Length=290544 Score = 205 bits (226), Expect = 8e-48 Identities = 974/1527 (64%), Gaps = 62/1527 (4%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || ||||| || | || || || || |||||| |||| | ||||| || Sbjct 179200 ACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAG 179259 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||||| ||||||||||| | |||| || || |||||| || | | || Sbjct 179260 CACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGC 179319 Query 138628 GAATTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685 || || |||| |||||| ||| ||| ||||| || |||| ||||||||| | | Sbjct 179320 GAGTTGCGTACACCGTGCTCAGCAATCTTC--TCCTTCAGAGACGCCCAGTCCCAGAGGT 179377 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745 | ||||| | ||||||||||||||||| | || ||| | ||||| |||| Sbjct 179378 CAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGATCCTT 179437 Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805 |||| | | ||| ||||| || | || | ||| | ||| ||| ||| Sbjct 179438 CGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCAT 179497 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865 ||| || || ||| || || |||||| || ||| | |||| | || | Sbjct 179498 GGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAA 179557 Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925 |||||| ||| || ||||| || ||||| || |||| |||| || || |||| Sbjct 179558 GGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGC 179617 Query 138926 GCAGATTTGACGCTTT-TGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTT 138984 | | | ||| || ||| |||||| ||| || | ||| || |||||||| ||||| Sbjct 179618 GGA-AGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTC 179676 Query 138985 AAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCC 139043 || || || ||| |||| || | | | | | | | | || || | ||| | Sbjct 179677 AAGTTGCGGGTGACGACCTGTGT-GACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGC 179735 Query 139044 GTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGC 139103 |||| |||||| | | || | | || | || || | |||||| || || Sbjct 179736 CTTGTAGTCGACAAA----AGAAGGCAG--GGCAAGA---GAAGCCAAGTTGCAAACAGC 179786 Query 139104 CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163 || || || || || |||| || ||||| || | |||| || | ||| || Sbjct 179787 GACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGT 179846 Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223 ||| | || | || ||||| || ||||| ||||| || ||||| |||||| | || | Sbjct 179847 ACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTT 179906 Query 139224 GCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACG 139283 ||||| || |||| ||| | ||| | | ||| ||||| | | | Sbjct 179907 ACCAGTCTCGGTCTGTGCCTCAAGGATGGCGT--ACCAA------AGCTTTTGT-----G 179953 Query 139284 CACGTAAAGT-TCG----------TC-GCG-CTCGTACTTTTCGTAGAGTTCGTCGAATC 139330 | || | ||| ||| || || |||||| | ||||| || | |||||| Sbjct 179954 CGCGAACAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATT 180013 Query 139331 GTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGC 139390 |||||||||| | || | || | | |||| || || ||||| || | ||| || Sbjct 180014 CTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGC 180073 Query 139391 CGTTCGCCTTGA-CGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCG 139449 |||| | ||||| | ||| ||||||| || || |||||||||| |||| | | | |||| Sbjct 180074 CGTT-GTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCG 180132 Query 139450 CGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCA 139509 || || || ||| || ||| || || |||||| |||| |||||| Sbjct 180133 CGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCA 180192 Query 139510 GCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCG 139566 ||||||||||| || || |||||||| | || ||| || ||| ||||| || ||| Sbjct 180193 GCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCG 180252 Query 139567 ACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCG 139626 || | || ||| || ||| |||| || | ||| || ||||| | | ||||||| Sbjct 180253 ACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCG 180312 Query 139627 TTGGTGCTACGGATGG----GACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGAT 139682 || |||| || |||| | | || ||| || | | || || |||| ||| || Sbjct 180313 TTAGTGCCACCGATGTATGAGCCAGT----AGCACGAATGCGGTGCACGTTGAGGCCAAT 180368 Query 139683 TCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCTTA 139741 ||||| | ||||| || || | || || | | ||| ||||| || || | Sbjct 180369 ACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTG-AGTGTGTCGTAAATGCCGTCGA 180427 Query 139742 TGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGG 139801 ||||||| |||| ||| || || ||||||||||| | ||| ||| | ||||| | Sbjct 180428 TGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCG 180487 Query 139802 CTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTT 139861 | |||| || || ||||| ||||| | || ||||| | ||||| || | Sbjct 180488 CGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCT 180547 Query 139862 CGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTT 139921 ||||||| || | || || ||||| || || |||| || ||||| ||||| |||| Sbjct 180548 CGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTT 180607 Query 139922 GGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTT 139979 | || ||||| ||| ||| | || ||||| | ||| || || ||||| Sbjct 180608 GTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGT--TCGAGTGTCTT 180665 Query 139980 GTAGCCAAAGTACCTATAGTTGAAATC 140006 | | |||||| || |||||||| || Sbjct 180666 GAAACCAAAGAACTGGTAGTTGAAGTC 180692 >seq530 Length=496674 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || |||||||| || ||| | | | Sbjct 171049 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 171108 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || ||||| || ||| Sbjct 171109 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 171168 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || ||| |||| || | | | || || || ||| Sbjct 171169 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 171228 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || |||||||| || ||||| ||||||||| Sbjct 171229 ATCCAAAAGGAGTCCACACTTCACTTGGTG 171258 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || ||||| | ||||| || | | | Sbjct 171277 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 171336 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| || || || ||||| || || Sbjct 171337 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 171396 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || |||||||| || ||| | ||||| || ||| Sbjct 171397 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 171456 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || ||||||||| Sbjct 171457 ATCCAGAAGGAGTCTACTCTCCACTTGGTG 171486 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || || || || || | ||||||| | || | || || | Sbjct 170845 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 170904 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || ||||| ||||| ||||| | ||||| ||||| || Sbjct 170905 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 170964 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || ||||| | | | |||| || || |||||||| ||||| || ||||| ||| Sbjct 170965 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 171024 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || | || ||||||| || Sbjct 171025 CTTGTCCTCCGCCTGCGCGGTGG 171047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894523825160