Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq366 140 5e-27 seq23 131 3e-24 seq88 127 3e-23 seq418 116 6e-20 >seq366 Length=209556 Score = 140 bits (154), Expect = 5e-27 Identities = 121/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| | || || ||| | |||||||||||||||||||| ||||||||| Sbjct 46500 AGGTCGACCAGGAGATGCTTTTCGAGATCATCCTCGCCGCCAACTACCTGGACATCAAGG 46441 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | ||||| || | || ||||||||||| || ||| | |||||||||||||| ||||| | Sbjct 46440 CTCTCCTTGACGTAGGATGCAAGACCGTCGCGAACATGATCAAGGGCAAGTCACCCGATG 46381 Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | ||||| |||||||| |||||| || ||| Sbjct 46380 AGATCCGTAAGACCTTCAACATCCAGAACG 46351 >seq23 Length=86929 Score = 131 bits (144), Expect = 3e-24 Identities = 179/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| |||||| |||||| ||||||||||| || | | Sbjct 34475 TGACACCGGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCA 34534 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | ||| ||||||| | ||||| ||| || |||| Sbjct 34535 GAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGA 34594 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| ||||| |||||||| || ||||| ||||||||||| | ||||||| Sbjct 34595 GGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCA 34654 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || || || | ||||| | ||||| | ||| ||||||||||| | Sbjct 34655 TGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTT 34714 Query 794131 CGATGATGAT 794140 | ||||||| Sbjct 34715 CAGTGATGAT 34724 Score = 120 bits (132), Expect = 5e-21 Identities = 225/328 (69%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||| | |||||| || || |||||||| || ||||||||| Sbjct 34798 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 34857 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| |||| || ||| ||||| ||||| || ||||| || Sbjct 34858 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 34917 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | ||||| || | ||| || ||| | || | | |||||| || ||||| Sbjct 34918 GCAACGAGGCGGTTGGCGAATGTG---GAGTTCTTGTCGGAGATCCATCGCAGGGCCCAG 34974 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| || | | |||| | ||||||||||| ||||||| ||| | | Sbjct 34975 TCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGT--ACCTGCGCT 35032 Query 794581 AC--CGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | || || | | ||| ||||||||||| || ||||||||||||||||| | ||| | Sbjct 35033 GCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAGGTCTCTGAGTGAACGTTCT 35092 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || ||| ||||| || || ||||| Sbjct 35093 CCATCATGATTTGGAAACCGTAGAAGCA 35120 Score = 104 bits (114), Expect = 4e-16 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| | ||| || || | ||| || | | |||||||| || ||||| Sbjct 35125 GCCTCGGGGATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCA 35184 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268 ||| ||| ||||| |||||||||||||| ||| ||| |||||||| ||| |||| Sbjct 35185 TCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGA 35244 Query 796269 --CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | | ||||| | ||| | |||||||| |||||| |||||||| || || Sbjct 35245 CGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAA 35304 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352 ||||||||||| |||||||||| ||| Sbjct 35305 GCCTCGGCCTTCTTGTACATCTGCCA 35330 >seq88 Length=290544 Score = 127 bits (140), Expect = 3e-23 Identities = 208/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||||||||| || |||| ||| | || ||||||||||| | || || || || Sbjct 180246 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGA 180305 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| | | ||| | ||| | || || | |||| || | ||| Sbjct 180306 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 180365 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | ||||||||| | ||| || | || || || ||||| ||||| || Sbjct 180366 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 180425 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| ||||| |||| || | ||||| Sbjct 180426 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 180485 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || ||||| | ||| |||| || ||| | ||| ||| |||||| |||||||| Sbjct 180486 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 180545 Score = 113 bits (124), Expect = 7e-19 Identities = 290/440 (66%), Gaps = 22/440 (5%) Strand=Plus/Plus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGG 2071641 ||| ||||||||||||| | || |||| || ||||||| ||||||||| | || Sbjct 179817 CTCAGTGCACAGGTTGGAG--CTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 179874 Query 2071642 TTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATG 2071701 ||| |||||||||| ||||| |||| ||| |||||| |||| ||| | |||| Sbjct 179875 TTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATG 179934 Query 2071702 GCCGACCAAA--TTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCC----CTNNNNNNNN 2071755 || |||||| ||| | ||||| || ||| ||||| | || Sbjct 179935 GCGTACCAAAGCTTTTGTGCGCGAACA-----GTC-TCGCGACCCTTGTTCTGCTTCTCG 179988 Query 2071756 NNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCG 2071815 | || || || || | | |||| | ||| ||||| || |||| Sbjct 179989 TAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCG 180048 Query 2071816 GACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC---ACCACGCGGCGCATAAACAGGTCG 2071872 |||||| | || | ||||| |||| ||| | ||||| | || || ||||| Sbjct 180049 TTCGGGCACATCAGTGTCCAGTTGCCGTT-GTCTTGAACACGCTTC--ATGAAGAGGTCA 180105 Query 2071873 CACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 2071932 ||||||| |||| ||||||||||| || ||| ||||||||||||||||||||| Sbjct 180106 GGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTG 180165 Query 2071933 TTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 2071992 |||||| || || | | || ||| |||||||| ||||| |||||| ||| ||||| Sbjct 180166 CGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCA 180225 Query 2071993 CCCTTGCGCTTGCCGCCGCC 2072012 || |||||| ||| || Sbjct 180226 CCTGGACGCTTGTTGCCACC 180245 >seq418 Length=236260 Score = 116 bits (128), Expect = 6e-20 Identities = 192/272 (71%), Gaps = 5/272 (2%) Strand=Plus/Minus Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445 || ||||||||| ||| || | ||||||||| || |||||| || || || ||| Sbjct 21530 TCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTTCC-TCCTTGTAGA--CCGGGAACC 21474 Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505 | ||||| | || ||| ||||| |||||| | | || ||| || || Sbjct 21473 ATGGGGTTCATCAAGTGTGCGCGCTCCTTGTAGCCGATCTTGGGAAGGACATCCTTTGCG 21414 Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565 | || ||||||||||||||||| || ||||||||| |||| || ||||||| |||| Sbjct 21413 AGCGCGAAGATCTTGCGCTGGTCTACACCTCCAAACTGGACGTCTACATCGAGGTACTGC 21354 Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTT-GCGGTCCAT 2411624 ||||| |||||||||||||| ||||||| ||| || || |||| || | || Sbjct 21353 TCGTCAAGGGCCTGCATGAGTGGGTAGATGAGTCCACTCAGAGGCGCATTCTCTGT-TTG 21295 Query 2411625 CTTGACCACCTGGGCGGCGGCCTTTTGCGCCG 2411656 |||||| |||| ||| | ||||| | ||||| Sbjct 21294 CTTGACAACCTCTGCGCCTGCCTTCTTCGCCG 21263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916188213115133