Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq366 140 5e-27
seq23 131 3e-24
seq88 127 3e-23
seq418 116 6e-20
>seq366
Length=209556
Score = 140 bits (154), Expect = 5e-27
Identities = 121/150 (81%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671
|||||||||| | || || ||| | |||||||||||||||||||| |||||||||
Sbjct 46500 AGGTCGACCAGGAGATGCTTTTCGAGATCATCCTCGCCGCCAACTACCTGGACATCAAGG 46441
Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731
| ||||| || | || ||||||||||| || ||| | |||||||||||||| ||||| |
Sbjct 46440 CTCTCCTTGACGTAGGATGCAAGACCGTCGCGAACATGATCAAGGGCAAGTCACCCGATG 46381
Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| ||||| |||||||| |||||| || |||
Sbjct 46380 AGATCCGTAAGACCTTCAACATCCAGAACG 46351
>seq23
Length=86929
Score = 131 bits (144), Expect = 3e-24
Identities = 179/250 (72%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||||| |||||| |||||| ||||||||||| || | |
Sbjct 34475 TGACACCGGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCA 34534
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| || || |||||| | ||| ||||||| | ||||| ||| || ||||
Sbjct 34535 GAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGA 34594
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | ||||| ||||| |||||||| || ||||| ||||||||||| | |||||||
Sbjct 34595 GGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCA 34654
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||||| || || || || | ||||| | ||||| | ||| ||||||||||| |
Sbjct 34655 TGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTT 34714
Query 794131 CGATGATGAT 794140
| |||||||
Sbjct 34715 CAGTGATGAT 34724
Score = 120 bits (132), Expect = 5e-21
Identities = 225/328 (69%), Gaps = 7/328 (2%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||| ||| ||| | |||||| || || |||||||| || |||||||||
Sbjct 34798 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 34857
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|||||||| ||||||| |||| || ||| ||||| ||||| || ||||| ||
Sbjct 34858 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 34917
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
| ||||| || | ||| || ||| | || | | |||||| || |||||
Sbjct 34918 GCAACGAGGCGGTTGGCGAATGTG---GAGTTCTTGTCGGAGATCCATCGCAGGGCCCAG 34974
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580
|| ||||| || | | |||| | ||||||||||| ||||||| ||| | |
Sbjct 34975 TCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGT--ACCTGCGCT 35032
Query 794581 AC--CGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638
| || || | | ||| ||||||||||| || ||||||||||||||||| | ||| |
Sbjct 35033 GCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAGGTCTCTGAGTGAACGTTCT 35092
Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666
| || ||| ||||| || || |||||
Sbjct 35093 CCATCATGATTTGGAAACCGTAGAAGCA 35120
Score = 104 bits (114), Expect = 4e-16
Identities = 147/206 (71%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
|||||||| | ||| || || | ||| || | | |||||||| || |||||
Sbjct 35125 GCCTCGGGGATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCA 35184
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268
||| ||| ||||| |||||||||||||| ||| ||| |||||||| ||| ||||
Sbjct 35185 TCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGA 35244
Query 796269 --CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326
| | ||||| | ||| | |||||||| |||||| |||||||| || ||
Sbjct 35245 CGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAA 35304
Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352
||||||||||| |||||||||| |||
Sbjct 35305 GCCTCGGCCTTCTTGTACATCTGCCA 35330
>seq88
Length=290544
Score = 127 bits (140), Expect = 3e-23
Identities = 208/300 (69%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||||||||| || |||| ||| | || ||||||||||| | || || || ||
Sbjct 180246 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGA 180305
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||| ||||| | | ||| | ||| | || || | |||| || | |||
Sbjct 180306 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 180365
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| ||||| || | ||||||||| | ||| || | || || || ||||| ||||| ||
Sbjct 180366 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 180425
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| ||||| |||| || | |||||
Sbjct 180426 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 180485
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839
|| ||||| | ||| |||| || ||| | ||| ||| |||||| ||||||||
Sbjct 180486 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 180545
Score = 113 bits (124), Expect = 7e-19
Identities = 290/440 (66%), Gaps = 22/440 (5%)
Strand=Plus/Plus
Query 2071584 CTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGG 2071641
||| ||||||||||||| | || |||| || ||||||| ||||||||| | ||
Sbjct 179817 CTCAGTGCACAGGTTGGAG--CTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 179874
Query 2071642 TTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATG 2071701
||| |||||||||| ||||| |||| ||| |||||| |||| ||| | ||||
Sbjct 179875 TTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATG 179934
Query 2071702 GCCGACCAAA--TTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCC----CTNNNNNNNN 2071755
|| |||||| ||| | ||||| || ||| ||||| | ||
Sbjct 179935 GCGTACCAAAGCTTTTGTGCGCGAACA-----GTC-TCGCGACCCTTGTTCTGCTTCTCG 179988
Query 2071756 NNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCG 2071815
| || || || || | | |||| | ||| ||||| || ||||
Sbjct 179989 TAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCG 180048
Query 2071816 GACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC---ACCACGCGGCGCATAAACAGGTCG 2071872
|||||| | || | ||||| |||| ||| | ||||| | || || |||||
Sbjct 180049 TTCGGGCACATCAGTGTCCAGTTGCCGTT-GTCTTGAACACGCTTC--ATGAAGAGGTCA 180105
Query 2071873 CACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 2071932
||||||| |||| ||||||||||| || ||| |||||||||||||||||||||
Sbjct 180106 GGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTG 180165
Query 2071933 TTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 2071992
|||||| || || | | || ||| |||||||| ||||| |||||| ||| |||||
Sbjct 180166 CGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCA 180225
Query 2071993 CCCTTGCGCTTGCCGCCGCC 2072012
|| |||||| ||| ||
Sbjct 180226 CCTGGACGCTTGTTGCCACC 180245
>seq418
Length=236260
Score = 116 bits (128), Expect = 6e-20
Identities = 192/272 (71%), Gaps = 5/272 (2%)
Strand=Plus/Minus
Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445
|| ||||||||| ||| || | ||||||||| || |||||| || || || |||
Sbjct 21530 TCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTTCC-TCCTTGTAGA--CCGGGAACC 21474
Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505
| ||||| | || ||| ||||| |||||| | | || ||| || ||
Sbjct 21473 ATGGGGTTCATCAAGTGTGCGCGCTCCTTGTAGCCGATCTTGGGAAGGACATCCTTTGCG 21414
Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565
| || ||||||||||||||||| || ||||||||| |||| || ||||||| ||||
Sbjct 21413 AGCGCGAAGATCTTGCGCTGGTCTACACCTCCAAACTGGACGTCTACATCGAGGTACTGC 21354
Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTT-GCGGTCCAT 2411624
||||| |||||||||||||| ||||||| ||| || || |||| || | ||
Sbjct 21353 TCGTCAAGGGCCTGCATGAGTGGGTAGATGAGTCCACTCAGAGGCGCATTCTCTGT-TTG 21295
Query 2411625 CTTGACCACCTGGGCGGCGGCCTTTTGCGCCG 2411656
|||||| |||| ||| | ||||| | |||||
Sbjct 21294 CTTGACAACCTCTGCGCCTGCCTTCTTCGCCG 21263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916188213115133
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