Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq88 324 1e-83 seq23 158 1e-33 seq530 109 5e-19 seq132 89.7 5e-13 >seq88 Length=290544 Score = 324 bits (358), Expect = 1e-83 Identities = 1137/1760 (65%), Gaps = 63/1760 (4%) Strand=Plus/Plus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111 |||||| |||||||||||| || ||||||||||||||||| ||||||| | || Sbjct 178986 CGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTCAATGATCC---TTCG 179042 Query 148112 CTTC---ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168 || | ||||||||| | |||||||| || ||| | | || || ||| | || Sbjct 179043 CTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGGGAAT 179102 Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228 | | ||| || | | || | || | || ||| | || | | || Sbjct 179103 CCTGGCAATCGAACCTCCATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACC 179162 Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288 | |||| ||||| | || || | | || || ||||| ||||| || ||||| || Sbjct 179163 CATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGAC 179222 Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 || || ||| | |||| || | || || || ||||||||||||||| |||||| Sbjct 179223 ACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 179282 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 | || | || || |||||| || | |||||||||||||| | |||| | | Sbjct 179283 TGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGC 179342 Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468 || || |||||||| ||||||||||||||| | ||||| || |||||||| || Sbjct 179343 AATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATC 179402 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 |||||| || || || || |||| || ||||| | |||| || || | | Sbjct 179403 GTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTC 179462 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 | || | ||||| | ||| || | | ||| || |||||| ||||| | Sbjct 179463 CTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGAT 179522 Query 148589 GTTGAGCAGCGCCGC--CGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCG 148646 ||||||| | || || || | ||| | || | || || | || || ||| Sbjct 179523 GTTGAGCTTCTTAGCTTCGTCTGAC--TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCG 179580 Query 148647 GCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC 148706 ||||| || || || |||| || ||||| ||||| | |||| | |||| || ||| Sbjct 179581 GCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTC 179639 Query 148707 -TCGAGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTG 148764 |||| || ||||||||| |||||||||||| ||||| ||||| || |||| || Sbjct 179640 TTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTCAAG-TTGCGGGTGACGACCTGTG 179698 Query 148765 TAATTCTGCGCAGC------AATTCAAA---ATCGTACTTGTCATCTACGATGCATCGGT 148815 | | | | | ||| || ||||| || ||||| || || | | | Sbjct 179699 TGACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGG-- 179756 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 || ||| | ||| || | ||||| || || |||||| || ||| ||||||| || | Sbjct 179757 -CAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAA 179815 Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935 |||| | |||||| ||| || ||| || | |||||| || |||||||||| || Sbjct 179816 TCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGT 179875 Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT-- 148993 |||| ||||||||||| ||||| | || ||||| || ||| | || | || Sbjct 179876 TGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGG 179935 Query 148994 -GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACC------CTCCTGCT 149046 | ||| | || | || ||||| || | | |||||| || || || Sbjct 179936 CGTACCAA---AGCTTTTGTGCGCGAACAGTC------TCGCGACCCTTGTTCTGCTTCT 179986 Query 149047 CGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104 |||| | ||| | ||| ||||| | || |||||| |||| |||| || ||||| Sbjct 179987 CGTAGCTCTCGTACAGAGC--TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCA 180044 Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164 || || ||||||||| || | ||| ||||| | | || |||||||| || || || Sbjct 180045 CTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTC 180104 Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG 149224 || | ||| || ||||| | ||| ||||| || | || || ||| ||| Sbjct 180105 AGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTT 180164 Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284 |||||||| || | || || | ||| |||||||| ||||| | ||| | |||| || Sbjct 180165 GCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGC 180224 Query 149285 GCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341 || ||| ||||| ||||||||||| | ||| | ||||||| | || || | Sbjct 180225 ACCTGGACGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAG 180284 Query 149342 CATAGGTTCAATG---CCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGC 149398 ||| || |||| ||| | | || |||||||| | ||| ||| || Sbjct 180285 CATGGG---AATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGC 180341 Query 149399 TCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTC 149458 || | ||||||||||| ||| || ||||| || ||| ||||| ||| ||| Sbjct 180342 ACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGT 180401 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 ||| || ||| ||||| ||||||||||| ||||||| | || ||||| || Sbjct 180402 CTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGA 180461 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA 149578 ||||||| || | | ||||| || ||||| || || ||||||||| || || Sbjct 180462 CGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 180521 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 || || ||| ||||| | ||||| | || ||||||||||| || ||||| Sbjct 180522 CTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCC 180581 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTT 149695 | || || ||||| ||||| || || || ||||| || || || |||| || Sbjct 180582 AACAGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTT---ATGCG 180638 Query 149696 GAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCC 149755 ||| | || ||| ||||||||| | |||||| ||| ||||| ||||| ||| | Sbjct 180639 GAGGAGATATGAACGTTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTC 180698 Query 149756 GTGGTCAATGGCGGCGTCGA 149775 || | | || || | || || Sbjct 180699 GTAGACGATAGCCGAGTTGA 180718 >seq23 Length=86929 Score = 158 bits (174), Expect = 1e-33 Identities = 353/521 (68%), Gaps = 13/521 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||||||||||| ||||| || ||||| || || || ||| |||||||| | Sbjct 34488 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 34547 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | |||| || || | ||| | | ||||| Sbjct 34548 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAACAGCAG 34607 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529 ||||| || || ||||| ||||| | ||||||| || | ||||||||||| |||| | Sbjct 34608 ACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTA-GCGTTCATGCCGAGCAGAG 34666 Query 120530 CCACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 | || | | || || | || ||||||| |||||| || || || || ||| || Sbjct 34667 CGCATGGTAGTG-CGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGATA 34725 Query 120589 GC---GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645 || || || | | ||| | || ||||| |||| | | | | || ||||| Sbjct 34726 GCTCTGA-CAGACTCTGGGCTGG--GCTTGTTCTCGAGGAGAG---AGAAGAGAAGGCAG 34779 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 || ||||| ||||||| ||||||||| || || || ||||||||| || || || ||| Sbjct 34780 GCGAAGTCGGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCG 34839 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765 ||||| | || | |||||| |||| |||| ||| || || ||||| | Sbjct 34840 GGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATA 34899 Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825 ||||| || ||| || || || | ||| | ||| || || | ||||| | |||| Sbjct 34900 CCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGGAGATC 34959 Query 120826 CACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 || || |||||| |||||||| ||||| | ||| || || Sbjct 34960 CATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAT 35000 >seq530 Length=496674 Score = 109 bits (120), Expect = 5e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| ||||||||| ||||| || Sbjct 171017 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 170958 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || || ||||| || ||||||||||| |||||||| ||||||| |||| Sbjct 170957 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 170898 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | || | ||||||| | ||| || || | |||| ||| |||||||||| Sbjct 170897 ACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 170843 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | ||| || || || || |||||||| | Sbjct 171473 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCG--TCTTCCAGCTGCTTAC 171416 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| |||||||| || |||||||| |||||| || Sbjct 171415 CAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 171356 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||||| | | ||| || || | || | ||| || ||||| |||| Sbjct 171355 TTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAG 171296 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 171295 TCTTGACAAAGATCTGCAT 171277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| || ||| ||| | ||||| |||| Sbjct 170743 ATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCCTCAAGCT 170685 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | ||||||||||| || || ||||| |||||||| ||||| Sbjct 170684 GCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT 170625 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | ||||| | | ||| || |||| ||||| ||| || |||| Sbjct 170624 TGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGG 170565 Query 133636 T 133636 | Sbjct 170564 T 170564 >seq132 Length=173857 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535 ||| | ||||| |||| |||||||||| || ||||||||||| |||||||| ||| Sbjct 66452 GGCATGCACGTCCACGCCTTTGGCGACAACACAAACGGCTGCACATCCGCCGGTCCCCAC 66511 Query 116536 TTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGAC 116595 ||||||||| | | || ||||| || ||| | | || | || |||||||||||| Sbjct 66512 TTCAACCCCCACAACAAGACACACGGTGCCCCCGAGGACGAGGAGCGCCACGTCGGTGAC 66571 Query 116596 CTGGGCAAC 116604 |||||||| Sbjct 66572 TTGGGCAAC 66580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417494610280