Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq530 91.5 3e-13
>seq530
Length=496674
Score = 91.5 bits (100), Expect = 3e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || ||| |||||| || | || |||||||||||||||
Sbjct 171133 AAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAACAGCGTCTCATCTTCGCCGGAAAG 171192
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||||||||||| || | ||| | |||| |||||| |||| || ||||| || ||||||
Sbjct 171193 CAGTTGGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGGAGTCCACACTTCAC 171252
Score = 87.8 bits (96), Expect = 4e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || || ||||| || || || |||||||| || | |||
Sbjct 171280 CAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGCGAC 171339
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| |||||| ||||| || || || || || || || ||| ||
Sbjct 171340 ACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAG 171399
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || |||||||| || |||||| ||||||| || | || | | || |||||| ||
Sbjct 171400 CGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAACATC 171459
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
||||| ||||||||||| |||
Sbjct 171460 CAGAAGGAGTCTACTCTCCAC 171480
Score = 86.0 bits (94), Expect = 1e-11
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || |||||| | || || || || ||||| |||| || ||| |
Sbjct 170845 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 170904
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || || ||||| ||| | ||||||||||||||||||
Sbjct 170905 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 170964
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| | || || || | || || |||| |||||| | ||||| ||||| || || |||
Sbjct 170965 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 171024
Query 206374 CTTGT 206378
|||||
Sbjct 171025 CTTGT 171029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181812517282787
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |