Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq88 244 1e-59 >seq88 Length=290544 Score = 244 bits (270), Expect = 1e-59 Identities = 983/1535 (64%), Gaps = 35/1535 (2%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || ||||| || || || ||||| | | ||| | ||| ||| | ||| Sbjct 179194 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 179253 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | || || | |||| || || |||||| || | Sbjct 179254 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 179313 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || || | ||||| | || || || ||||||| || ||||||||| Sbjct 179314 AGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 179373 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGG----CGGG 147128 | | || || || |||||||| ||||||||||| | || |||| |||| Sbjct 179374 AGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACC----CTGGGATACGGG 179429 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCC--GTCGCGCTGCGCCAATTCACAGCTTGCCTCG 147186 | || || | || |||| || || | |||| | || || | | Sbjct 179430 AGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCG--ATGTCGCATGAGGAAGTG 179487 Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246 || || ||| ||| ||||| ||| |||||| |||| || | ||||| || | Sbjct 179488 AGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGAC 179547 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| |||| | || || | ||||||||||| | ||| || | ||| | ||||| Sbjct 179548 TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATG 179607 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCG-CTATGGGATAGTGGTTGCGATCAAT 147365 ||||| || ||||||||| || ||| | | || ||||||||| || || Sbjct 179608 GGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACCTCGAT 179666 Query 147366 AATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA 147425 |||||||| | ||| || || || | || | | | ||| |||| ||| ||| | Sbjct 179667 GATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAA 179726 Query 147426 -AGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484 | || | ||| | || || | || ||| | ||| |||| ||||| || | Sbjct 179727 CACGCCGGCCTTGTAGTCG-ACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACAG 179785 Query 147485 CCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGA 147544 | ||| || | || |||||| ||| || || | |||||||||| || ||| Sbjct 179786 CGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGG 179845 Query 147545 CTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 147604 || | || | ||| ||||| || || ||||| ||||| ||| ||||||| | || Sbjct 179846 TACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGT 179905 Query 147605 CGCCGGTCTCGACTTGCGTTTCAACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCC 147661 || |||||| || | |||| ||| ||| | || | || || || || Sbjct 179906 TACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGC---TTTTGTGCGCGAACAG 179962 Query 147662 GCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721 || ||| | || || ||||| | |||||||| || || || || |||| Sbjct 179963 TCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGT 180022 Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781 || |||||| ||||| || |||| | ||| |||||||| | ||| || ||| | | Sbjct 180023 AGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTT 180082 Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGC 147841 ||| || ||| || || || || | |||||| ||||| | |||||||| || | Sbjct 180083 GAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGA 180142 Query 147842 AATCCTCGGCGCCCATGTT---GCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCC 147898 ||||| ||| ||| ||| || | ||| | || | ||| ||| ||||||| Sbjct 180143 CCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAAGCCAAAGACGTCAGCGTGCC 180199 Query 147899 AGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGC 147955 | || || | ||||| ||| | |||||| |||||| || ||||||||||||| || Sbjct 180200 ATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAGC 180259 Query 147956 GCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGG 148015 | | ||||||| | || || | |||||| || || | | || ||||| ||| Sbjct 180260 GAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTTAGTGC 180319 Query 148016 AATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGT 148075 | ||| | ||| || || | ||||||||| | |||||| ||||| || Sbjct 180320 CACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGG 180379 Query 148076 ACTTTGATATGGCAGCGCAATCGCCC--AATGTCGTGTAGATGCCGTCGATGCTGTCGTT 148133 ||| || || || |||| | | | ||| ||| ||||||||||||||||| | Sbjct 180380 TCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTC 180437 Query 148134 TTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAG 148193 || | | | | | || || || ||||||| || | || ||||| ||| | Sbjct 180438 CTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAA 180497 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTC 148253 || || ||||| || || | |||||| ||| | || ||||| || || | Sbjct 180498 CGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTT 180557 Query 148254 TTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||||| |||||||||||||| | || || |||||||||||||| ||||| || || Sbjct 180558 CTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGGCGCTC 180617 Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373 ||| || | ||| || ||| |||||| | |||||| || ||| |||||||| | Sbjct 180618 GGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCGAGTGTCTTGAAACCAAAGAA 180677 Query 148374 CTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||| | || || | ||||| |||| |||| Sbjct 180678 CTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCG 180712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607941170920