Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq88 244 1e-59
>seq88
Length=290544
Score = 244 bits (270), Expect = 1e-59
Identities = 983/1535 (64%), Gaps = 35/1535 (2%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| || || ||||| || || || ||||| | | ||| | ||| ||| | |||
Sbjct 179194 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 179253
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| || |||| || ||||| | || || | |||| || || |||||| || |
Sbjct 179254 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 179313
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| || || || || | ||||| | || || || ||||||| || |||||||||
Sbjct 179314 AGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 179373
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGG----CGGG 147128
| | || || || |||||||| ||||||||||| | || |||| ||||
Sbjct 179374 AGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACC----CTGGGATACGGG 179429
Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCC--GTCGCGCTGCGCCAATTCACAGCTTGCCTCG 147186
| || || | || |||| || || | |||| | || || | |
Sbjct 179430 AGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCG--ATGTCGCATGAGGAAGTG 179487
Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246
|| || ||| ||| ||||| ||| |||||| |||| || | ||||| || |
Sbjct 179488 AGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGAC 179547
Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306
||| |||| | || || | ||||||||||| | ||| || | ||| | |||||
Sbjct 179548 TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATG 179607
Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCG-CTATGGGATAGTGGTTGCGATCAAT 147365
||||| || ||||||||| || ||| | | || ||||||||| || ||
Sbjct 179608 GGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACCTCGAT 179666
Query 147366 AATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA 147425
|||||||| | ||| || || || | || | | | ||| |||| ||| ||| |
Sbjct 179667 GATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAA 179726
Query 147426 -AGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484
| || | ||| | || || | || ||| | ||| |||| ||||| || |
Sbjct 179727 CACGCCGGCCTTGTAGTCG-ACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACAG 179785
Query 147485 CCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGA 147544
| ||| || | || |||||| ||| || || | |||||||||| || |||
Sbjct 179786 CGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGG 179845
Query 147545 CTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 147604
|| | || | ||| ||||| || || ||||| ||||| ||| ||||||| | ||
Sbjct 179846 TACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGT 179905
Query 147605 CGCCGGTCTCGACTTGCGTTTCAACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCC 147661
|| |||||| || | |||| ||| ||| | || | || || || ||
Sbjct 179906 TACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGC---TTTTGTGCGCGAACAG 179962
Query 147662 GCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721
|| ||| | || || ||||| | |||||||| || || || || ||||
Sbjct 179963 TCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGT 180022
Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781
|| |||||| ||||| || |||| | ||| |||||||| | ||| || ||| | |
Sbjct 180023 AGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTT 180082
Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGC 147841
||| || ||| || || || || | |||||| ||||| | |||||||| || |
Sbjct 180083 GAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGA 180142
Query 147842 AATCCTCGGCGCCCATGTT---GCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCC 147898
||||| ||| ||| ||| || | ||| | || | ||| ||| |||||||
Sbjct 180143 CCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAAGCCAAAGACGTCAGCGTGCC 180199
Query 147899 AGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGC 147955
| || || | ||||| ||| | |||||| |||||| || ||||||||||||| ||
Sbjct 180200 ATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAGC 180259
Query 147956 GCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGG 148015
| | ||||||| | || || | |||||| || || | | || ||||| |||
Sbjct 180260 GAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTTAGTGC 180319
Query 148016 AATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGT 148075
| ||| | ||| || || | ||||||||| | |||||| ||||| ||
Sbjct 180320 CACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGG 180379
Query 148076 ACTTTGATATGGCAGCGCAATCGCCC--AATGTCGTGTAGATGCCGTCGATGCTGTCGTT 148133
||| || || || |||| | | | ||| ||| ||||||||||||||||| |
Sbjct 180380 TCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTC 180437
Query 148134 TTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAG 148193
|| | | | | | || || || ||||||| || | || ||||| ||| |
Sbjct 180438 CTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAA 180497
Query 148194 GGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTC 148253
|| || ||||| || || | |||||| ||| | || ||||| || || |
Sbjct 180498 CGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTT 180557
Query 148254 TTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313
|||||||| |||||||||||||| | || || |||||||||||||| ||||| || ||
Sbjct 180558 CTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGGCGCTC 180617
Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373
||| || | ||| || ||| |||||| | |||||| || ||| |||||||| |
Sbjct 180618 GGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCGAGTGTCTTGAAACCAAAGAA 180677
Query 148374 CTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408
|| ||| | || || | ||||| |||| ||||
Sbjct 180678 CTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCG 180712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476607941170920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |