Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq23 206 4e-47
>seq23
Length=86929
Score = 206 bits (228), Expect = 4e-47
Identities = 356/508 (70%), Gaps = 22/508 (4%)
Strand=Plus/Minus
Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838
||| | |||||| || ||||||||||| || || |||||||| |||||| ||||||||
Sbjct 35330 TGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTC 35272
Query 1455839 CGCCGACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893
| ||| | ||||| | ||| | | ||| ||||||||| ||||||
Sbjct 35271 CAAGGACCTTCACGACTGGAACAAGCGTCTC--AACGATGACGAGCGCTTCTTCATCTCC 35214
Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953
|||||||||||||| || ||| ||| ||||||||| || ||||||||| | | ||
Sbjct 35213 CACGTCCTCGCCTTCTT-CGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCG 35155
Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013
|| | || || ||| | || |||||||| | || ||||| ||||| ||| ||
Sbjct 35154 ATTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGAT 35095
Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG-- 1456071
|| ||| | ||||| || |||||||| || || |||||||| ||| | | || ||
Sbjct 35094 GGAGAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAA 35035
Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131
| | | ||| ||||||| ||||||||||| | || | | | || ||||||
Sbjct 35034 GCAGCGCAGGT--ACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 34977
Query 1456132 GACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188
|||||||| || |||||| ||||| | ||| ||| || ||| | || ||||
Sbjct 34976 GACTGGGCCCTGCGATGGATCTCCGACAAGAA----CTCCACA-TTCGCCAACCGCCTCG 34922
Query 1456189 TCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247
| | || ||||| || ||||| ||||| ||| || |||| | ||||||| ||||
Sbjct 34921 TTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGC 34862
Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||||||| || |||||||||||
Sbjct 34861 TCAAGAAGCGCGGTCTGATGCCCGGTCT 34834
Score = 123 bits (136), Expect = 4e-22
Identities = 232/332 (70%), Gaps = 8/332 (2%)
Strand=Plus/Minus
Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCC--GTCGACCGA 1456509
||||| ||||| ||||| || |||| | | | |||| |||||||| | | | |
Sbjct 34795 TGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGT 34736
Query 1456510 CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569
| || | ||| |||||| || ||||||||||| ||| | ||||| | ||||| |
Sbjct 34735 C-TGTCAGAGCT-ATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGC 34678
Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629
|| || || || ||||||||||||| | | ||||||||||| ||||| | | ||
Sbjct 34677 ACTACCATGCGCTCTGCTCGGCATGAACGCTA-CTCTCATGTGCCAATACATCG-AGTTC 34620
Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689
||||| ||||| ||||| ||| |||||| | | ||| ||||| | |||||||
Sbjct 34619 GTCGCTGACCGTCTGCTGTTGGCCCTCGGCAAC-GTCAAGGTCTACCACGCCACCAACCC 34561
Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749
||| | |||||| || || || | || ||||||||||| |||||| |||||
Sbjct 34560 CTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGT 34501
Query 1456750 -GGCGAGTACGCCAAGGCCGGCGTCACCGCCA 1456780
||||| ||| |||||||| |||| ||||
Sbjct 34500 CGGCGACTACCAGAAGGCCGGTGTCATGGCCA 34469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177758440844614
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |