Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq88 143 3e-29
seq530 113 5e-20
>seq88
Length=290544
Score = 143 bits (158), Expect = 3e-29
Identities = 540/839 (64%), Gaps = 15/839 (2%)
Strand=Plus/Minus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
||||||||||| |||| || || || |||||||||||||| ||||| || ||| |
Sbjct 180608 CAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGATGACATCGAGAAGGCCATC 180549
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| || ||| | |||||| || | || || ||||| ||||| || |||| |
Sbjct 180548 GAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAAC 180489
Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743
||||||||| | || ||| |||| || || || | | |||| || ||||||
Sbjct 180488 GCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAGC 180429
Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGG 7802
||||||||||||||| |||| || | || || || || ||||| || |||||
Sbjct 180428 ATCGACGGCATTTACGACACACT-CAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGG 180370
Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862
|| || || ||||| || | | || || | || ||||| ||| |||||
Sbjct 180369 TATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATACATCGGTGGCACTAACGG 180310
Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922
|| | | | ||| | |||||| | || || | ||| ||| | | || |||| ||
Sbjct 180309 AACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCGA 180250
Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979
|||||| || ||||| ||| ||| |||||||| | ||||| |||||||| ||
Sbjct 180249 CCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTGA 180190
Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGA 8039
| | | | | || | ||||| ||| || || || | || |||||
Sbjct 180189 CGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGA 180130
Query 8040 TCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACA 8099
||| |||| || ||||| | || || || || |||| ||| ||||| | ||| |
Sbjct 180129 TCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTTCAAGACAACGGCAA 180070
Query 8100 ATGGTCGCTCATGTGCCCCGATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAAT 8158
||| | || ||||| ||||| || |||||| | | || |||||| | |||
Sbjct 180069 CTGGACACTGATGTG-CCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAAT 180011
Query 8159 TTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAG--TGAAAGC 8216
| ||| ||||| | ||||| || | | | | | || || || ||
Sbjct 180010 TCGAAGCTCTGTACGAGAGCTACGA----GAAGCAGAACAAGGGTCGCGAGACTGTTCGC 179955
Query 8217 GCGC--GACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274
|| | | || |||||| | || || | ||| || |||| || | |||
Sbjct 179954 GCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTTTATG 179895
Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334
|| ||||| |||||||||||| ||| ||||| || | ||| | || ||||| | ||
Sbjct 179894 CTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGC 179835
Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAA 8393
||| |||||| |||| ||||| |||||| ||| || || || || || ||||||||
Sbjct 179834 TCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTGCAA 179776
>seq530
Length=496674
Score = 113 bits (124), Expect = 5e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || ||||| ||||| ||||||||||||||| | |||| | ||| |||
Sbjct 171029 ACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 170970
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || || || || || || | || |||||||| || || ||||| || || |||||
Sbjct 170969 AGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGG 170910
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| ||| ||||| ||| | |||||||| || || || || ||||| ||||| ||
Sbjct 170909 ATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTG 170850
Query 134685 CCGGT 134689
|||||
Sbjct 170849 CCGGT 170845
Score = 109 bits (120), Expect = 6e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || || | ||||| || || || |||||||| || ||||||||||||
Sbjct 170766 CCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 170707
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| || || || ||||| ||||| || || ||||| |||||||| || || ||
Sbjct 170706 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 170647
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || ||||| ||| | ||||| || || || ||
Sbjct 170646 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACC 170587
Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689
||||| || ||||| || |||||
Sbjct 170586 TCGAGGGTGATGGTCTTTCCGGT 170564
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| | ||| || ||||| |||||||| ||||||||||||
Sbjct 171275 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 171216
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| || | ||| || || || || || | |||||| || || || ||
Sbjct 171215 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 171156
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || ||||| || || ||||| ||| | |||||| ||||||||
Sbjct 171155 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 171096
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| || || || | || || ||||| ||||||||
Sbjct 171095 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505394944338440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |