Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq530 109 5e-19
>seq530
Length=496674
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || || ||||| || ||||||||| | | || |||||||
Sbjct 171257 ACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCC 171198
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
| ||| || |||||| | |||||||||||||| ||||| || | |||||| || || |
Sbjct 171197 AACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGG 171138
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| || | | | || | |||||| | | ||| || || || || || | |||
Sbjct 171137 ATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTG 171078
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| ||||| || || || ||||||||||||
Sbjct 171077 CCAGTCAGGGTCTTGACGAAGATTTGCATA 171048
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | ||||| || || || || |||||||| | | || |||||||
Sbjct 171485 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCC 171426
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| ||||| ||| | ||||||||||| || || || || | |||||| || || |
Sbjct 171425 AGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGG 171366
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | || | ||||| | | || ||||| | || || | ||
Sbjct 171365 ATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTT 171306
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || ||||| || |||||||| ||||||
Sbjct 171305 CCGGTAAGAGTCTTGACAAAGATCTGCATA 171276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424931567148264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |