Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq23 107 6e-18 >seq23 Length=86929 Score = 107 bits (118), Expect = 6e-18 Identities = 361/547 (66%), Gaps = 29/547 (5%) Strand=Plus/Minus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || |||||| |||||||| || |||||||||||| | ||| |||||| | || || Sbjct 35300 TTCTGGACCGCAGAGGAGATCGACCTCTCCAAGGACCTTCACGACTGGAACAAGCGTCTC 35241 Query 443397 TCTAGCCATGAAC-GCGATTTCTTCAAATGCA---TCTTGGCCTTCTTTGCACCGAGCGA 443452 | | |||| ||| || ||||| | | || | |||||||| ||| | ||| Sbjct 35240 ---AACGATGACGAGCGCTT-CTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGA 35185 Query 443453 CGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTA---CGAAATGGTAGTGTACACCGA 443509 || || ||| ||||| || || ||| |||| |||| | | | | |||| Sbjct 35184 TGGCATTGTCAACGAGAACCTTGTTGAGCGATTCTCTAGCGAAGTACAAAT---CCCCGA 35128 Query 443510 GGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAG 443569 ||| || | |||||||| |||||| | ||||||||| ||||| | ||| |||| Sbjct 35127 GGCACGATGCTTCTACGGTTTCCAAATCATGATGGAGAACGTTCACTCAGAGACCTACTC 35068 Query 443570 TCAGTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCG---GTCCATCTTCTCATC 443626 || | | ||| | ||| ||| | ||| | | ||||| || | ||||| | | Sbjct 35067 TCTGCTCATCGACACATACATT---AGCGAGCCCAAGCAGCGCAGGTACCTCTTC--AAC 35013 Query 443627 GTTCAT-GACCACG--CCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGA 443683 | ||| ||| || || ||||| | ||| | |||||| | ||| || Sbjct 35012 GC-CATCGACAACATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTC 34954 Query 443684 ACGAGAAAATCTCAGC-TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGT 443742 ||| || | ||| | |||| | | || || || || || || | || || || | | Sbjct 34953 -CGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCT 34895 Query 443743 TGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGT 443802 | || ||||| |||| ||||||||||||||| | || ||||| || || |||| |||| Sbjct 34894 TCTTCAGCGGTT-CTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGT 34836 Query 443803 CTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGT 443862 || || || ||||| || ||| ||| |||||||| |||| |||||||||||| Sbjct 34835 CTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACCGACTTCGCCTGC 34776 Query 443863 CTTCTCT 443869 ||||||| Sbjct 34775 CTTCTCT 34769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588324868246415