Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq88 257 2e-63 seq23 87.8 2e-12 >seq88 Length=290544 Score = 257 bits (284), Expect = 2e-63 Identities = 1117/1741 (64%), Gaps = 37/1741 (2%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || |||||||| || ||||||| || | ||||| || | Sbjct 178888 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTG 178947 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | || || | |||| || ||| | || || || || ||||| Sbjct 178948 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAA 179007 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTCC 118014 || || || || ||||| ||||| | |||||| | ||| ||||| || ||| Sbjct 179008 GCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTCT 179065 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG--ATGGATCCACCCGC 118072 |||| ||| |||| | || || ||||| | || || ||| || || || || | Sbjct 179066 TGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGG-GA-ATCCTGGCAATCGAACCTCCATC 179123 Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 || || | | |||||| | || ||||| ||||| || | || |||| | Sbjct 179124 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAG 179183 Query 118133 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 | ||| | ||||||| |||||||| |||||| || | |||||| ||| Sbjct 179184 CAACCATGGGT--TGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTG 179241 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | ||||||||||| |||||||| ||||| |||| || || | |||||||| || ||| Sbjct 179242 GAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGC 179301 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 |||||||| ||||| || ||| || | ||| | || ||| ||||| |||| Sbjct 179302 ATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGAC 179361 Query 118311 TCCCAGTCGTAGTTG--AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368 ||||||| || | || | || | | | ||||||||| ||||||||||||| | Sbjct 179362 GCCCAGTCCCAGAGGTCAG-TAGGTGTGACATT-CCACATATCGTACTGGAGGATACCCT 179419 Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGC 118428 |||| | || ||||| || | |||| || || || ||| || | ||| | Sbjct 179420 GGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATG 179479 Query 118429 TCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCT 118488 | ||| || || || || || || || || || | || | ||| || | Sbjct 179480 AGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTT 179539 Query 118489 CGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 118548 |||| || || || | || ||| | || |||| || |||||||| ||||| | Sbjct 179540 CGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCA 179599 Query 118549 GGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGG-TCTCC-ACGGGATAAAAATT 118606 || || || || || | | || || | | | | ||| | || || || || Sbjct 179600 TACCGATGGGTCGGTGGCGGAAGTTG--CTGCGGCGTGCCTCTTCGACAGGGTAGTGGTT 179657 Query 118607 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 118666 ||||| | | | || | || |||||| |||| ||||| ||| || ||||| | Sbjct 179658 GACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTT 179717 Query 118667 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 118726 | | ||||| || | || | | |||| | ||| ||||| | || |||| || Sbjct 179718 GAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTT 179777 Query 118727 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACT 118786 || |||| | |||||| | | |||||||| | ||| || ||||||| ||| || || Sbjct 179778 GCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCT 179837 Query 118787 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 118846 ||||| || | |||||| || || ||| ||| || || |||||||| ||||| Sbjct 179838 GCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCAT 179897 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGG 118906 | || | || ||||| || || | || || || || | ||| | | || | Sbjct 179898 AAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGCG 179957 Query 118907 CACAGTGGCGTTGGC-TCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 118965 ||||| || | | | | |||| ||||| | ||| || ||||| || |||| Sbjct 179958 AACAGTCTCGCGACCCTTGTTCTGCTTC-TCGTAGCTCTCGTACAGAGCTTCGAATTCTT 180016 Query 118966 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 119025 |||| | | || | ||| || || || | ||||| | || | ||| | || Sbjct 180017 CACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGT 180076 Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 119085 || | ||| ||||||||||||||||| || ||||| || || |||||||||| ||| Sbjct 180077 TGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAG 180136 Query 119086 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 119145 ||| | || || | || || || |||| || | ||| | | || || |||| Sbjct 180137 CGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGT 180196 Query 119146 GCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAGCCTGGTTTA 119199 |||| || || ||||| | |||| | | ||| |||| ||| |||||| | Sbjct 180197 GCCATGGCTCGAGGTAGATGGCGAAGG-CACCTG--GACGCTTGTTGCCACCCTGGTCGA 180253 Query 119200 CATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCAT 119259 |||| | |||||| ||| ||||||| ||||| ||||||| ||||| ||| || | Sbjct 180254 CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGT 180313 Query 119260 TTGTCCC-CCGAA-TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACC 119317 | || || |||| || ||| | | | || | | ||| | || | |||||||| Sbjct 180314 TAGTGCCACCGATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACC 180371 Query 119318 CCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGA 119377 || || ||| ||||| ||| || | |||| || |||| || || ||||| Sbjct 180372 GCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCT 180431 Query 119378 GTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTT 119437 ||| |||| | ||||||||||||| ||||||||| || ||||| || ||||| Sbjct 180432 GTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTT 180491 Query 119438 GAAGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCA 119496 ||| | || || | ||||| |||| ||| ||| ||||| | |||||||||||| | Sbjct 180492 GAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGA 180550 Query 119497 AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGG 119556 | | ||||| || |||||||| || | | || ||||| | ||||| ||| | Sbjct 180551 TGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTG 180610 Query 119557 G 119557 | Sbjct 180611 G 180611 >seq23 Length=86929 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||||||||| |||||||| || || ||||| ||||| ||||| ||||| |||||| Sbjct 34798 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 34857 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || || ||||||||| ||||| ||| ||||| Sbjct 34858 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 34917 Query 130154 GCAAAGAGACG 130164 |||| ||| || Sbjct 34918 GCAACGAGGCG 34928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430971449320