Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq88 257 2e-63
seq23 87.8 2e-12
>seq88
Length=290544
Score = 257 bits (284), Expect = 2e-63
Identities = 1117/1741 (64%), Gaps = 37/1741 (2%)
Strand=Plus/Plus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
||||| |||||||| || |||||||| || ||||||| || | ||||| || |
Sbjct 178888 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTG 178947
Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956
| |||| | || || | |||| || ||| | || || || || |||||
Sbjct 178948 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAA 179007
Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTCC 118014
|| || || || ||||| ||||| | |||||| | ||| ||||| || |||
Sbjct 179008 GCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTCT 179065
Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG--ATGGATCCACCCGC 118072
|||| ||| |||| | || || ||||| | || || ||| || || || || |
Sbjct 179066 TGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGG-GA-ATCCTGGCAATCGAACCTCCATC 179123
Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132
|| || | | |||||| | || ||||| ||||| || | || |||| |
Sbjct 179124 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAG 179183
Query 118133 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190
| ||| | ||||||| |||||||| |||||| || | |||||| |||
Sbjct 179184 CAACCATGGGT--TGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTG 179241
Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250
| ||||||||||| |||||||| ||||| |||| || || | |||||||| || |||
Sbjct 179242 GAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGC 179301
Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310
|||||||| ||||| || ||| || | ||| | || ||| ||||| ||||
Sbjct 179302 ATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGAC 179361
Query 118311 TCCCAGTCGTAGTTG--AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368
||||||| || | || | || | | | ||||||||| ||||||||||||| |
Sbjct 179362 GCCCAGTCCCAGAGGTCAG-TAGGTGTGACATT-CCACATATCGTACTGGAGGATACCCT 179419
Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGC 118428
|||| | || ||||| || | |||| || || || ||| || | ||| |
Sbjct 179420 GGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATG 179479
Query 118429 TCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCT 118488
| ||| || || || || || || || || || | || | ||| || |
Sbjct 179480 AGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTT 179539
Query 118489 CGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 118548
|||| || || || | || ||| | || |||| || |||||||| ||||| |
Sbjct 179540 CGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCA 179599
Query 118549 GGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGG-TCTCC-ACGGGATAAAAATT 118606
|| || || || || | | || || | | | | ||| | || || || ||
Sbjct 179600 TACCGATGGGTCGGTGGCGGAAGTTG--CTGCGGCGTGCCTCTTCGACAGGGTAGTGGTT 179657
Query 118607 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 118666
||||| | | | || | || |||||| |||| ||||| ||| || ||||| |
Sbjct 179658 GACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTT 179717
Query 118667 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 118726
| | ||||| || | || | | |||| | ||| ||||| | || |||| ||
Sbjct 179718 GAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTT 179777
Query 118727 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACT 118786
|| |||| | |||||| | | |||||||| | ||| || ||||||| ||| || ||
Sbjct 179778 GCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCT 179837
Query 118787 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 118846
||||| || | |||||| || || ||| ||| || || |||||||| |||||
Sbjct 179838 GCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCAT 179897
Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGG 118906
| || | || ||||| || || | || || || || | ||| | | || |
Sbjct 179898 AAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGCG 179957
Query 118907 CACAGTGGCGTTGGC-TCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 118965
||||| || | | | | |||| ||||| | ||| || ||||| || ||||
Sbjct 179958 AACAGTCTCGCGACCCTTGTTCTGCTTC-TCGTAGCTCTCGTACAGAGCTTCGAATTCTT 180016
Query 118966 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 119025
|||| | | || | ||| || || || | ||||| | || | ||| | ||
Sbjct 180017 CACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGT 180076
Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 119085
|| | ||| ||||||||||||||||| || ||||| || || |||||||||| |||
Sbjct 180077 TGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAG 180136
Query 119086 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 119145
||| | || || | || || || |||| || | ||| | | || || ||||
Sbjct 180137 CGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGT 180196
Query 119146 GCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAGCCTGGTTTA 119199
|||| || || ||||| | |||| | | ||| |||| ||| |||||| |
Sbjct 180197 GCCATGGCTCGAGGTAGATGGCGAAGG-CACCTG--GACGCTTGTTGCCACCCTGGTCGA 180253
Query 119200 CATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCAT 119259
|||| | |||||| ||| ||||||| ||||| ||||||| ||||| ||| || |
Sbjct 180254 CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGT 180313
Query 119260 TTGTCCC-CCGAA-TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACC 119317
| || || |||| || ||| | | | || | | ||| | || | ||||||||
Sbjct 180314 TAGTGCCACCGATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACC 180371
Query 119318 CCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGA 119377
|| || ||| ||||| ||| || | |||| || |||| || || |||||
Sbjct 180372 GCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCT 180431
Query 119378 GTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTT 119437
||| |||| | ||||||||||||| ||||||||| || ||||| || |||||
Sbjct 180432 GTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTT 180491
Query 119438 GAAGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCA 119496
||| | || || | ||||| |||| ||| ||| ||||| | |||||||||||| |
Sbjct 180492 GAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGA 180550
Query 119497 AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGG 119556
| | ||||| || |||||||| || | | || ||||| | ||||| ||| |
Sbjct 180551 TGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTG 180610
Query 119557 G 119557
|
Sbjct 180611 G 180611
>seq23
Length=86929
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093
||||||||||| |||||||| || || ||||| ||||| ||||| ||||| ||||||
Sbjct 34798 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 34857
Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153
|| | |||||| || | || || || ||||||||| ||||| ||| |||||
Sbjct 34858 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 34917
Query 130154 GCAAAGAGACG 130164
|||| ||| ||
Sbjct 34918 GCAACGAGGCG 34928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618430971449320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |