Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq88 298 6e-76
seq23 120 4e-22
>seq88
Length=290544
Score = 298 bits (330), Expect = 6e-76
Identities = 1126/1743 (65%), Gaps = 39/1743 (2%)
Strand=Plus/Minus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
|||||| ||||| ||||||| || || | || ||||| || || ||||| || |
Sbjct 180612 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGATGACATCGAGAAGGC 180553
Query 104281 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 104339
| | ||||| |||||| | ||||| ||| ||| |||| ||||| | || || | |
Sbjct 180552 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 180494
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| || || |||||| ||| |||||||| |||||||| |||| || |||||||
Sbjct 180493 TCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 180434
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|| ||| |||| || || | || || | | |||||| ||||| ||| ||||
Sbjct 180433 ACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 180374
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 104517
| |||||||| | || | || | | || | | ||| || |||| || ||
Sbjct 180373 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGG--CTCATACATCGGTGGCAC 180316
Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577
|| || ||| ||||| | ||||| ||||| || |||| ||| ||| || |||||
Sbjct 180315 TAACGGAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 180256
Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631
||| | || | ||| ||||| | || | |||| |||| || ||||||||
Sbjct 180255 TGTCGACCAGGGTGGCAACAAGCGTCCA---GGTGCCTTCGCCATCTACCTCGAGCCATG 180199
Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CG 104689
|||||| || || | | |||||||| |||| ||||| || | ||||||| ||
Sbjct 180198 GCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG 180139
Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749
|| | ||||||||||||| |||||| |||||||| || |||||||||||| | ||| |
Sbjct 180138 CGCT--CGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTTCAA 180081
Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809
|| | ||||| ||| | || | || || || || ||||| ||| |||||| |
Sbjct 180080 GACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTAC 180021
Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC-TGCGAC 104868
||||| || || ||||| || ||| | ||||| |||| || | | | | | |||
Sbjct 180020 GGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGA-GAAGCAGAACAAGGGTCGCGAGAC 179962
Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928
|| | || | | ||| | || || || || | || ||||||||||||| ||
Sbjct 179961 TGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCC 179902
Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988
| ||||| ||||| ||||| || |||| ||||| || || ||||| | ||| ||
Sbjct 179901 CTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCAT 179842
Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048
| || ||||| || || || || || |||| | || | |||||| |||||
Sbjct 179841 CCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGT 179782
Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 105107
|| ||| | || || | || || || | ||| || | || || | ||||
Sbjct 179781 TTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACA-AGGCCGGCGTGTTTG 179723
Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167
| | | || ||||||||||| || | |||||| ||| | |||| | || |
Sbjct 179722 ACTTCAAGAAGCTCCACGAAGTCACACAGGTCGTCACCCGCAACTTGAACAAGATCATCG 179663
Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227
| || ||||| || || || || || | | ||||| || || |
Sbjct 179662 AGGTCAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATCG 179603
Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287
|| | |||||||| ||||| || |||| ||| | |||| | || || || |
Sbjct 179602 GTATGGGTGTTCAAGGTCTTGCCGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCAG 179543
Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347
||||||| ||| | |||| | || || |||||||| || || || |||||
Sbjct 179542 ACGAAGCTAAGAAGCTCAACATCCAAATCTTCGAGACCATCTACCATGCTGCTCTCACTT 179483
Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407
| | || | ||| ||| |||||| || | |||| || || ||||| | |
Sbjct 179482 CCTCATGCGACATCGCAAAGGAACTTGGTCCTTACAAGACCTACGAAGGATCTCCCGTAT 179423
Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTG 105465
| || || | || || | ||||||| |||| || | ||| | || | || |||||
Sbjct 179422 CCCAGGGTATCCTCCAGTACGATATGT-GGAATGTCACACCTA-CTGACCTCTGGGACTG 179365
Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525
|| |||| ||||| || ||| | ||| | || ||| || ||||| || ||
Sbjct 179364 GGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGCAACTCGCTGCTCATTGCACC 179305
Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585
|||||||| |||||||| |||| || |||| || || || ||||| || || |||||
Sbjct 179304 CATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACAC 179245
Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT-- 105643
| ||||||||| | | |||||| || ||||| | |||||||| |||
Sbjct 179244 CTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAAC--CCATGG 179187
Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTG 105703
| | | ||||| || || ||||| ||||| || | |||||| | | || |
Sbjct 179186 TTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCATC 179127
Query 105704 AAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTAC 105763
| || ||||| ||| | ||| | || || | || | |||| | |||
Sbjct 179126 GCCGATGGAGGTTCGATTGCCAGGATTCCCAACATCCCTGAGGAGACAAAGACCCTTTAC 179067
Query 105764 CGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821
|| || ||||| ||| | |||||| ||||||| |||||||| || ||||||
Sbjct 179066 AAGACCGTCTGGGAGATCTCGCAGCGAAGGA--TCATTGAGATGGCCGCTGACCGTGGTG 179009
Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879
|||||||| | |||| ||| | || || |||| | || || ||| |||
Sbjct 179008 CTTTCATTGACC--AGTCTCAGTCGCTAAACATCCACATGAAGGAGCCTACTATGGGCAA 178951
Query 105880 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 105939
| || ||||||||||| | | |||||| |||||||| || || ||||| || ||
Sbjct 178950 GATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTCAAGACTGGCATGTACTATCT 178891
Query 105940 CCG 105942
|||
Sbjct 178890 CCG 178888
>seq23
Length=86929
Score = 120 bits (132), Expect = 4e-22
Identities = 291/438 (66%), Gaps = 2/438 (0%)
Strand=Plus/Minus
Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866
|| ||| | ||||| || ||||||||||||||||||| ||||| ||| | | ||
Sbjct 34928 CGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATC 34869
Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926
| |||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 34868 TTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCT 34809
Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAA 94986
||||||||||| | ||| || || || || ||| | | | ||
Sbjct 34808 CGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAG 34749
Query 94987 CCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTC 95046
|| | | ||| || | |||| | | |||||||| ||||||||| | | |||
Sbjct 34748 CCCAGCCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTC 34689
Query 95047 ATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAATAT 95106
| || || || ||||||||||| |||| ||||| || |||| ||||
Sbjct 34688 TTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATAC 34629
Query 95107 ATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCA-ATTTGGAACTC 95165
|| |||| || |||| | || || | || || | || | | | || |
Sbjct 34628 ATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTC-GGCAACGTCAAGGTCTACCACGC 34570
Query 95166 CAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGA 95225
|| || || || |||||||||||||||||| || | || ||||| |||||||||||
Sbjct 34569 CACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGA 34510
Query 95226 AAAGAGGGTTGGGGACTA 95243
||| | || || |||||
Sbjct 34509 GAAGCGCGTCGGCGACTA 34492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583256811954280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |