Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq530 138 3e-27 seq377 127 6e-24 >seq530 Length=496674 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||||||||| || || || || || || || | ||||| || ||||| | Sbjct 171483 CAAG-TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCA 171425 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| ||||| ||||| ||||| |||||||| || || || || ||||| | Sbjct 171424 GCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGA 171365 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | |||||||| || |||| || | || ||||| | ||||| ||||||| Sbjct 171364 TCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTC 171305 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || ||||| |||||||| Sbjct 171304 CGGTAAGAGTCTTGACAAAGATCTGCAT 171277 Score = 114 bits (126), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || ||||| || || || ||||| || ||||| || | Sbjct 171055 TTTGCATACCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGT 170996 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || ||||| ||||| || ||||| || |||||||||| Sbjct 170995 AGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGAT 170936 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || || || || || || | || || || || || | || |||| Sbjct 170935 CCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATG 170876 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||||| ||||| || | ||||| ||||| Sbjct 170875 ACTCAACCTCAAGAGTGATGGTCTTGCCGGT 170845 Score = 104 bits (114), Expect = 7e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || ||||| || ||||| || || || || || || || Sbjct 170770 CATACCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTC 170711 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || || || ||||| | || ||||| || || Sbjct 170710 GGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGG 170651 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 ||||| || || || ||||| || || ||| || ||||| || || | ||||| | | Sbjct 170650 GGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATAGTGTCAGAAGACT 170592 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 |||| || || || | ||||||||||| | ||| Sbjct 170591 CAACCTCGAGGGTGATGGTCTTTCCGGTGACTGT 170558 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| ||||| || || || || Sbjct 171279 CATACCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTC 171220 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||| | || ||||| || ||||| ||||| || || || || Sbjct 171219 GGAGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGG 171160 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || || || || || | || || || ||||| | || || ||| Sbjct 171159 AGGAATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTC 171100 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || || ||||| Sbjct 171099 CACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049 >seq377 Length=510444 Score = 127 bits (140), Expect = 6e-24 Identities = 707/1122 (63%), Gaps = 21/1122 (2%) Strand=Plus/Minus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590 |||||| || || ||||| ||||| || || |||| ||||| ||| || | || | Sbjct 313135 ACCCGAGGAGATCTCATCTATGGTCTTGACCAAGATGAGGGAAACTGCCGAGTCCTACCT 313076 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 |||| || || | | ||||| | ||||| || || || || || || | || || Sbjct 313075 CGGTGGCACCGTTAACAACGCTGTCGTCACTGTTCCCGCATACTTCAACGACTCGCAACG 313016 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 | || || || |||||||| |||||| || | || || || | || || || || Sbjct 313015 TCAGGCTACCAAGGATGCTGGTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGA 312956 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTAT 349770 || ||||| || || || || || || ||||| || | || || || || | Sbjct 312955 GCCTACTGCCGCTGCCATCGCCTACGGTCTTGACAAGAAGACCGAGGGTGAGCGCAACGT 312896 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 ||||| || || || ||||||||||| || ||||| || || | || | || ||||| Sbjct 312895 CCTTATCTTCGACTTGGGTGGTGGTACCTTCGATGTCTCCCTCTTGACCATCGAGGAGGG 312836 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || || || || | ||||| ||||| || || | ||||| || || || || || Sbjct 312835 TATCTTCGAGGTCAAGTCCACTGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAA 312776 Query 349891 TCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGA 349950 |||||||| || || || || || |||||| |||| | || | | || Sbjct 312775 CCGTCTCGTCAACCACTTCACCAACGAGTTCAAGCGT-AAGC-ACAAGAAGGACTTGACC 312718 Query 349951 T--AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 | || || | || | ||||| || |||| || || || | || ||||| | | Sbjct 312717 TCCAACGCTCGTGCTCTCCGTCGTCTCCGAACCGCTTGCGAGAGGGCCAAGCGCACTCTG 312658 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 || ||| | | || ||||| || || || || || || || || | || |||| Sbjct 312657 TCCTCTTCCGCTCAGACCTCCATCGAGATCGACTCCCTGTACGAGGGTATCGACTTCTAC 312598 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATG 350128 | || || |||||||| || ||||| | || ||| || || | | || ||| Sbjct 312597 ACCAGCATCACCCGTGCTCGTTTCGAAGAGCTCTGCCAGGACCTCTTCCGCTCCACCATG 312538 Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAAGT 350187 || || || || || | ||||| || || | | | || | | | || | Sbjct 312537 GAGCCCGTCGAGCGTGTCCTCCGCGATGCTAAGATCGACAAGTCCTCCG-TCCACGAGAT 312479 Query 350188 AGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTT 350247 || || || ||||| || || ||||| || || || || || | | || || || || Sbjct 312478 TGTCTTGGTCGGTGGATCCACCCGTATCCCCAAGGTCCAGAAGATGGTCTCCGACTTCTT 312419 Query 350248 TAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGC 350307 || ||||| || || | || || || || ||||| ||||| || || ||||| || Sbjct 312418 CAACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCTGTCGCTTACGGTGCCGC 312359 Query 350308 TGTTCAGGCATCTATTTTATCTGG----AAAT-----AAGAGTTCTAAAATTGATGATCT 350358 || ||||| |||| | ||||| | || ||| |||| || |||| Sbjct 312358 CGTCCAGGCTGCTATCCTGTCTGGTGACACATCCTCCAAG---TCTACCTCCGA-GATC- 312304 Query 350359 ATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGAC 350418 | || || || || | || ||||| | || | || || |||||| || ||||| Sbjct 312303 -CTGCTTCTCGACGTCGCGCCGCTTTCCATCGGTATCGAGACCGCTGGTGGTGTCATGAC 312245 Query 350419 TGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATT 350478 || ||| || | || | || | || || || |||||| | || || || || Sbjct 312244 TGCTCTCATCAAGCGCAACACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTT 312185 Query 350479 TGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAA 350538 || || ||||| | || || || || | || ||||| ||||||||||| || Sbjct 312184 CAGCGACAACCAGCCCGGTGTGCTTATCCAGGTCTACGAGGGTGAGCGTGCTCGCACCAA 312125 Query 350539 AGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGT 350598 || || || || ||| | || || | | || ||||| ||| | || || Sbjct 312124 GGACAACAACCTGCTCGGAAAGTTCGAGCTTACCGGTATCCCACCTGCTCCTCGTGGTGT 312065 Query 350599 TCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 ||| ||||| || ||| | |||||| |||| | || ||||| Sbjct 312064 TCCCCAGATCGAGGTCACCTTCGATGTTGACGCCAACGGTAT 312023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515243780434241