Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq530 138 3e-27
seq377 127 6e-24
>seq530
Length=496674
Score = 138 bits (152), Expect = 3e-27
Identities = 156/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589
|||| || ||||||||||| || || || || || || || | ||||| || ||||| |
Sbjct 171483 CAAG-TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCA 171425
Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649
| || || ||||| ||||| ||||| ||||| |||||||| || || || || ||||| |
Sbjct 171424 GCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGA 171365
Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709
| || | |||||||| || |||| || | || ||||| | ||||| |||||||
Sbjct 171364 TCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTC 171305
Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||| || || || ||||| ||||||||
Sbjct 171304 CGGTAAGAGTCTTGACAAAGATCTGCAT 171277
Score = 114 bits (126), Expect = 4e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||||||||| || | | || ||||| || || || ||||| || ||||| || |
Sbjct 171055 TTTGCATACCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGT 170996
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || || ||||| ||||| || ||||| || ||||||||||
Sbjct 170995 AGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGAT 170936
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| ||||| || || || || || || || || | || || || || || | || ||||
Sbjct 170935 CCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATG 170876
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
||||| ||||| || | ||||| |||||
Sbjct 170875 ACTCAACCTCAAGAGTGATGGTCTTGCCGGT 170845
Score = 104 bits (114), Expect = 7e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||| ||||| | | || || ||||| || ||||| || || || || || || ||
Sbjct 170770 CATACCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTC 170711
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || || || ||||| | || ||||| || ||
Sbjct 170710 GGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGG 170651
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685
||||| || || || ||||| || || ||| || ||||| || || | ||||| | |
Sbjct 170650 GGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATAGTGTCAGAAGACT 170592
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719
|||| || || || | ||||||||||| | |||
Sbjct 170591 CAACCTCGAGGGTGATGGTCTTTCCGGTGACTGT 170558
Score = 102 bits (112), Expect = 2e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || ||||| ||||| || || || ||
Sbjct 171279 CATACCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTC 171220
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || ||||| | || ||||| || ||||| ||||| || || || ||
Sbjct 171219 GGAGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGG 171160
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || || || || || | || || || ||||| | || || |||
Sbjct 171159 AGGAATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTC 171100
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| || || || || || || || || |||||
Sbjct 171099 CACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049
>seq377
Length=510444
Score = 127 bits (140), Expect = 6e-24
Identities = 707/1122 (63%), Gaps = 21/1122 (2%)
Strand=Plus/Minus
Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590
|||||| || || ||||| ||||| || || |||| ||||| ||| || | || |
Sbjct 313135 ACCCGAGGAGATCTCATCTATGGTCTTGACCAAGATGAGGGAAACTGCCGAGTCCTACCT 313076
Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650
|||| || || | | ||||| | ||||| || || || || || || | || ||
Sbjct 313075 CGGTGGCACCGTTAACAACGCTGTCGTCACTGTTCCCGCATACTTCAACGACTCGCAACG 313016
Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710
| || || || |||||||| |||||| || | || || || | || || || ||
Sbjct 313015 TCAGGCTACCAAGGATGCTGGTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGA 312956
Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTAT 349770
|| ||||| || || || || || || ||||| || | || || || || |
Sbjct 312955 GCCTACTGCCGCTGCCATCGCCTACGGTCTTGACAAGAAGACCGAGGGTGAGCGCAACGT 312896
Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830
||||| || || || ||||||||||| || ||||| || || | || | || |||||
Sbjct 312895 CCTTATCTTCGACTTGGGTGGTGGTACCTTCGATGTCTCCCTCTTGACCATCGAGGAGGG 312836
Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890
|| || || || || | ||||| ||||| || || | ||||| || || || || ||
Sbjct 312835 TATCTTCGAGGTCAAGTCCACTGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAA 312776
Query 349891 TCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGA 349950
|||||||| || || || || || |||||| |||| | || | | ||
Sbjct 312775 CCGTCTCGTCAACCACTTCACCAACGAGTTCAAGCGT-AAGC-ACAAGAAGGACTTGACC 312718
Query 349951 T--AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008
| || || | || | ||||| || |||| || || || | || ||||| | |
Sbjct 312717 TCCAACGCTCGTGCTCTCCGTCGTCTCCGAACCGCTTGCGAGAGGGCCAAGCGCACTCTG 312658
Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068
|| ||| | | || ||||| || || || || || || || || | || ||||
Sbjct 312657 TCCTCTTCCGCTCAGACCTCCATCGAGATCGACTCCCTGTACGAGGGTATCGACTTCTAC 312598
Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATG 350128
| || || |||||||| || ||||| | || ||| || || | | || |||
Sbjct 312597 ACCAGCATCACCCGTGCTCGTTTCGAAGAGCTCTGCCAGGACCTCTTCCGCTCCACCATG 312538
Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAAGT 350187
|| || || || || | ||||| || || | | | || | | | || |
Sbjct 312537 GAGCCCGTCGAGCGTGTCCTCCGCGATGCTAAGATCGACAAGTCCTCCG-TCCACGAGAT 312479
Query 350188 AGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTT 350247
|| || || ||||| || || ||||| || || || || || | | || || || ||
Sbjct 312478 TGTCTTGGTCGGTGGATCCACCCGTATCCCCAAGGTCCAGAAGATGGTCTCCGACTTCTT 312419
Query 350248 TAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGC 350307
|| ||||| || || | || || || || ||||| ||||| || || ||||| ||
Sbjct 312418 CAACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCTGTCGCTTACGGTGCCGC 312359
Query 350308 TGTTCAGGCATCTATTTTATCTGG----AAAT-----AAGAGTTCTAAAATTGATGATCT 350358
|| ||||| |||| | ||||| | || ||| |||| || ||||
Sbjct 312358 CGTCCAGGCTGCTATCCTGTCTGGTGACACATCCTCCAAG---TCTACCTCCGA-GATC- 312304
Query 350359 ATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGAC 350418
| || || || || | || ||||| | || | || || |||||| || |||||
Sbjct 312303 -CTGCTTCTCGACGTCGCGCCGCTTTCCATCGGTATCGAGACCGCTGGTGGTGTCATGAC 312245
Query 350419 TGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATT 350478
|| ||| || | || | || | || || || |||||| | || || || ||
Sbjct 312244 TGCTCTCATCAAGCGCAACACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTT 312185
Query 350479 TGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAA 350538
|| || ||||| | || || || || | || ||||| ||||||||||| ||
Sbjct 312184 CAGCGACAACCAGCCCGGTGTGCTTATCCAGGTCTACGAGGGTGAGCGTGCTCGCACCAA 312125
Query 350539 AGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGT 350598
|| || || || ||| | || || | | || ||||| ||| | || ||
Sbjct 312124 GGACAACAACCTGCTCGGAAAGTTCGAGCTTACCGGTATCCCACCTGCTCCTCGTGGTGT 312065
Query 350599 TCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640
||| ||||| || ||| | |||||| |||| | || |||||
Sbjct 312064 TCCCCAGATCGAGGTCACCTTCGATGTTGACGCCAACGGTAT 312023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515243780434241
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |