Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq88 462 2e-125 >seq88 Length=290544 Score = 462 bits (512), Expect = 2e-125 Identities = 1170/1759 (67%), Gaps = 49/1759 (3%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || || | |||||||||||| ||||||||||| |||||| || | ||||||| Sbjct 178885 GTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAA 178944 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| | | || | || |||| |||||| |||||||| |||||||| ||| Sbjct 178945 GTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATG 179004 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTT--TGCGGAATCTCCCAGATGG 78367 | ||||| ||||| || ||||| || |||| | ||| |||| |||||||||| || Sbjct 179005 AAAGCACCACGGTCAGCGGCCATCTCAATGATC--CTTCGCTGCGAGATCTCCCAGACGG 179062 Query 78368 TCCGGTAAATGGCCTTCAGCTCTTCCTGGATGT--------CCAGCGCTTGTACGCTCCC 78419 || ||||| || ||| ||| || |||||| | || | | || |||| Sbjct 179063 TCTTGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGGGAATCCTGGCAATCGAAC-CTCC- 179120 Query 78420 ACCGGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATC 78479 | |||| | | | ||| | | | || ||| || || | ||| || Sbjct 179121 ATCGGCGATGATACGGTTCTTCATGTTCTCAGA---CCACAGACCCATGTCGACAAGGTC 179177 Query 78480 CCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGAT 78539 | || || |||| | | |||||| || || ||| ||||| ||||| Sbjct 179178 CTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGAT 179237 Query 78540 GTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGT 78599 ||||| ||||| |||||||| ||||||||| |||| ||||| | || ||||| || Sbjct 179238 GTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGT 179297 Query 78600 CGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG 78659 ||||||||||| | || || || || || | ||| ||| |||| |||| || Sbjct 179298 TGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAG 179357 Query 78660 ----GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACC 78713 ||| |||||| | ||| | | | || |||||| || || |||||||| Sbjct 179358 AGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACC 179417 Query 78714 CTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA 78773 || ||| | || || || | | | |||| ||||| || ||||| |||| ||||| Sbjct 179418 CTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCA 179477 Query 78774 TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGC 78833 ||| || || || ||||| | | ||||||||| ||||||||| || Sbjct 179478 TGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGC 179537 Query 78834 CTTGGTCTCG-TCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGC 78892 || |||| ||||| | ||||| ||| | |||| ||||||| || || || || | Sbjct 179538 -TTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACAC 179596 Query 78893 CGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGT 78952 | ||| |||| ||||||||||| | |||||| || ||| | ||| ||||| || Sbjct 179597 CCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGT 179656 Query 78953 TCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGG 79012 | ||||||| ||||| ||| || ||||||||| | || || |||| | || Sbjct 179657 TGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCT 179716 Query 79013 CGAAATCAAA-ATGATTTCCTTT-----GATGAAAGTCGGTAGGCACAGCGATGCCAGGT 79066 ||| ||||| | | |||| || |||| || ||| || || |||| || Sbjct 179717 TGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGT 179776 Query 79067 TGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACG 79126 |||| || || ||| || || | ||| | || || ||||||| || || Sbjct 179777 TGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGC 179836 Query 79127 ACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186 |||||| |||| |||||||||||||||||| ||| || |||||||||||| || Sbjct 179837 TGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCA 179896 Query 79187 TGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCC 79246 | | || | || ||||| ||| || || | | ||| ||| | | | || | Sbjct 179897 TAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGC 179956 Query 79247 GGACAACCTTCTTGTACCGACCCTG----TGCGAC--GTACGTCCGGTACAACTCGTTGA 79300 | ||| ||| | ||||||| ||| | ||| || ||||| | | || Sbjct 179957 GAACAG---TCTCG---CGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGA 180010 Query 79301 AAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGT 79360 | | || || |||||||||| ||||| |||||||||| |||||||||||| ||||| Sbjct 180011 ATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGT 180070 Query 79361 CCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGT 79420 ||| | | ||| || |||||||||||| || |||||||| || |||||| | Sbjct 180071 TGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGAT 180130 Query 79421 CGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGT 79480 |||| || | |||||| | ||| |||||| ||||| || || ||| | | || || Sbjct 180131 CGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGT 180190 Query 79481 CGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGT 79540 | |||||||| ||||| || ||||||||||| | ||| |||||| ||| ||||||| Sbjct 180191 CAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGT 180250 Query 79541 TGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGC 79600 ||| || || || ||||||||| | || ||||||||||| | || || | | | Sbjct 180251 CGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTC 180310 Query 79601 CGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATG 79659 |||| || || ||| || || | || |||||| | ||| || || || || Sbjct 180311 CGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATG-CGGTGCACGTTGAGGCCAATA 180369 Query 79660 CCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATC 79719 || || | ||||||||| ||| || |||||| || ||||| ||||| ||||| Sbjct 180370 CCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATG 180429 Query 79720 GAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG-GTTGTTCGTACCGGC 79778 ||| |||||||| ||| |||||||| |||||| ||||| | || | || || || Sbjct 180430 CTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT-GTGCCCGC 180488 Query 79779 GTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 |||||| | ||||||| ||||| |||||| ||||||| ||| ||||| ||||| Sbjct 180489 GTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTC 180548 Query 79839 CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG 79898 || | | || ||| |||||||| ||||| || || || ||||||| | || || Sbjct 180549 GATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 180608 Query 79899 -GGGCGTCTCGCCGACATT 79916 ||||| |||| |||| || Sbjct 180609 TGGGCG-CTCGGCGACCTT 180626 Score = 416 bits (460), Expect = 3e-111 Identities = 1140/1725 (66%), Gaps = 35/1725 (2%) Strand=Plus/Minus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||||| || || || ||||| || ||||| ||| || | | | |||||| |||| Sbjct 180598 TCATGCGTGTTGCTGTTGGCATTCACGGCGATGACATCGAGAAGGCCATCGAGACCTACG 180539 Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235 || ||| || |||| |||||| ||||| ||||||| | |||||||| || || | Sbjct 180538 ACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAACGCGGGCAC-A 180480 Query 19236 ACAAC-CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 || | || || |||||| || ||||| | | |||||||| |||||||| || ||| Sbjct 180479 CCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAGCATCGACGGC 180420 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 || ||||| || |||||| || ||| ||||||||| | || ||||| || || Sbjct 180419 ATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGGTATTGGCCTC 180360 Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413 || ||| | || || | | ||| || ||| ||| || |||||| | | | Sbjct 180359 AACGTGCACCGC-ATTCGTGCTACTGGCTCATACATCGGTGGCACTAACGGAACATCTAA 180301 Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 ||| || | || |||||||| || | ||||||||| || | || ||| ||||||| || Sbjct 180300 TGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCGACCAGGGTGG 180241 Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533 | ||| || || | ||||||||||||||||||||||||||||| |||||| | | Sbjct 180240 CAACAAGCGTCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTGACGTCTTTGG 180181 Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593 ||||| || |||||| |||||| || | |||||| | ||| |||||| |||||| Sbjct 180180 CTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGATCTCTTCTA 180121 Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653 || |||||||||| ||||| |||||| || ||| | | ||| | ||| || Sbjct 180120 CGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTTCAAGACAACGGCAACTGGACACT 180061 Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTT 19713 |||||||||| |||| ||||||||||| |||| |||||||| || | ||| | | | Sbjct 180060 GATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTCGAAGCTCT 180001 Query 19714 GTACCGGACTTACGTAGCCCAGGGC-CGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCT 19772 |||| || |||| ||| | || || | || || || || | | | | Sbjct 180000 GTACGAGAGCTACGAGAAGCAGAACAAGGGTCGCG-AGACTGTTCGCGCACAAAAGCTTT 179942 Query 19773 GGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACG 19832 || || | |||| | ||| |||||| || | || | ||| ||||||||||| Sbjct 179941 GGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTTTATGCTCTACAAGGACG 179882 Query 19833 CCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTA 19892 | ||| |||| || ||||||||| |||| | ||| ||||||||||| | Sbjct 179881 CTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTCCAACCTGTGCA 179822 Query 19893 CTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGT 19952 |||| || ||||| || || || ||| || || || || |||| || || Sbjct 179821 CTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTGCAACTTGGCTTCTCTTG 179762 Query 19953 GCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGG 20006 |||||| |||| || ||||||| | || ||||| || | |||| | Sbjct 179761 CCCTGCCTTCTTTTGTCGACTACAAGGCCGGCGTGTTTGACTTCAAGAAGCTCCACGAAG 179702 Query 20007 TGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCG 20066 | || | ||||||||| || || |||| ||||||| ||| ||||| || Sbjct 179701 TCACACAGGTCGTCACCCGCAACTTGAACAAGATCATCGAGGTCAACCACTACCCTGTCG 179642 Query 20067 AGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGG 20126 | | ||| ||| || | |||||||| || |||| || || || || || || | Sbjct 179641 AAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATCGGTATGGGTGTTCAAGGTCTTG 179582 Query 20127 CCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACA 20186 |||| | ||| | ||| |||| | ||||| | | || ||||||||| Sbjct 179581 CCGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCAGACGAAGCTAAGAAGCTCAACA 179522 Query 20187 AGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAG 20246 ||||||||| || | ||||| || || ||| || ||||| |||| || | Sbjct 179521 TCCAAATCTTCGAGACCATCTACCATGCTGCTCTCACTTCCTCATGCGACATCGCAAAGG 179462 Query 20247 AGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGG 20306 | || || ||| |||| | | | || || |||| ||| |||||||||||||| | Sbjct 179461 AACTTGGTCCTTACAAGACCTACGAAGGATCTCCCGTATCCCAGGGTATCCTCCAGTACG 179402 Query 20307 ACATGTGGGGCGTCACTGAGAATGAGTTTTG-----GAGCG-CCCTCAAGGTTGAGATCA 20360 | |||||| ||||| | ||| | || | ||| | || |||| |||| Sbjct 179401 ATATGTGGAATGTCACACCTACTGACCTCTGGGACTGGGCGTCTCTGAAGGAGAAGATTG 179342 Query 20361 AGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCC 20420 ||||| | ||||||||| ||||| | || |||||||| || ||||| || | | Sbjct 179341 CTGAGCACGGTGTACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCAC 179282 Query 20421 AGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTA 20480 |||| |||| ||||||||| |||||||| ||||| |||||||||| | || ||| Sbjct 179281 AGATTCTGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTG 179222 Query 20481 CACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGG-TCCGCGA----CTTGCAGAA 20535 || || ||||||||| || ||| ||| | | ||| | | | | |||| | | Sbjct 179221 TCCTCGCTGGTGAGTTC--CA-GGTTGTCAA-CCCATGGTTGCTCAAGGACCTTGTCG-A 179167 Query 20536 GATCGATATGTGGTCGCCCAAAATTAAGAATGAAAT--TGTCCGA-GCCGGCGGGAGCGT 20592 || | | ||||||| || || ||||| || | |||| | || || | Sbjct 179166 CATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCATCGCCGATGGAGGTTCGATTG- 179108 Query 20593 CCAGGCATT--GGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATC 20650 ||||| ||| | ||||| || | ||| | |||||| |||||| ||||| ||| Sbjct 179107 CCAGG-ATTCCCAACATCCCTGAGGAGACAAAGACCCTTTACAAGACCGTCTGGGAGATC 179049 Query 20651 CCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAG 20710 | ||| || ||||| || ||||| || || || || || | ||| |||||||| ||| Sbjct 179048 TCGCAGCGAAGGATCATTGAGATGGCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAG 178989 Query 20711 TCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTAC 20770 ||||| || || |||| || | || | ||| ||| | | || ||||| | Sbjct 178988 TCGCTAAACATCCACATGAAGGAGCCTACTATGGGCAAGATCACTTCTATGCACTTTGCT 178929 Query 20771 GGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815 |||||| | || |||||||| |||||||||||||| || ||| Sbjct 178928 GGCTGGAAGGCTGGTCTCAAGACTGGCATGTACTATCTCCGTACC 178884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521049461680