Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq88 462 2e-125
>seq88
Length=290544
Score = 462 bits (512), Expect = 2e-125
Identities = 1170/1759 (67%), Gaps = 49/1759 (3%)
Strand=Plus/Plus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|| || | |||||||||||| ||||||||||| |||||| || | |||||||
Sbjct 178885 GTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAA 178944
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| | |||| ||| | | || | || |||| |||||| |||||||| |||||||| |||
Sbjct 178945 GTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATG 179004
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTT--TGCGGAATCTCCCAGATGG 78367
| ||||| ||||| || ||||| || |||| | ||| |||| |||||||||| ||
Sbjct 179005 AAAGCACCACGGTCAGCGGCCATCTCAATGATC--CTTCGCTGCGAGATCTCCCAGACGG 179062
Query 78368 TCCGGTAAATGGCCTTCAGCTCTTCCTGGATGT--------CCAGCGCTTGTACGCTCCC 78419
|| ||||| || ||| ||| || |||||| | || | | || ||||
Sbjct 179063 TCTTGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGGGAATCCTGGCAATCGAAC-CTCC- 179120
Query 78420 ACCGGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATC 78479
| |||| | | | ||| | | | || ||| || || | ||| ||
Sbjct 179121 ATCGGCGATGATACGGTTCTTCATGTTCTCAGA---CCACAGACCCATGTCGACAAGGTC 179177
Query 78480 CCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGAT 78539
| || || |||| | | |||||| || || ||| ||||| |||||
Sbjct 179178 CTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGAT 179237
Query 78540 GTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGT 78599
||||| ||||| |||||||| ||||||||| |||| ||||| | || ||||| ||
Sbjct 179238 GTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGT 179297
Query 78600 CGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG 78659
||||||||||| | || || || || || | ||| ||| |||| |||| ||
Sbjct 179298 TGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAG 179357
Query 78660 ----GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACC 78713
||| |||||| | ||| | | | || |||||| || || ||||||||
Sbjct 179358 AGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACC 179417
Query 78714 CTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA 78773
|| ||| | || || || | | | |||| ||||| || ||||| |||| |||||
Sbjct 179418 CTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCA 179477
Query 78774 TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGC 78833
||| || || || ||||| | | ||||||||| ||||||||| ||
Sbjct 179478 TGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGC 179537
Query 78834 CTTGGTCTCG-TCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGC 78892
|| |||| ||||| | ||||| ||| | |||| ||||||| || || || || |
Sbjct 179538 -TTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACAC 179596
Query 78893 CGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGT 78952
| ||| |||| ||||||||||| | |||||| || ||| | ||| ||||| ||
Sbjct 179597 CCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGT 179656
Query 78953 TCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGG 79012
| ||||||| ||||| ||| || ||||||||| | || || |||| | ||
Sbjct 179657 TGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCT 179716
Query 79013 CGAAATCAAA-ATGATTTCCTTT-----GATGAAAGTCGGTAGGCACAGCGATGCCAGGT 79066
||| ||||| | | |||| || |||| || ||| || || |||| ||
Sbjct 179717 TGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGT 179776
Query 79067 TGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACG 79126
|||| || || ||| || || | ||| | || || ||||||| || ||
Sbjct 179777 TGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGC 179836
Query 79127 ACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186
|||||| |||| |||||||||||||||||| ||| || |||||||||||| ||
Sbjct 179837 TGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCA 179896
Query 79187 TGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCC 79246
| | || | || ||||| ||| || || | | ||| ||| | | | || |
Sbjct 179897 TAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGC 179956
Query 79247 GGACAACCTTCTTGTACCGACCCTG----TGCGAC--GTACGTCCGGTACAACTCGTTGA 79300
| ||| ||| | ||||||| ||| | ||| || ||||| | | ||
Sbjct 179957 GAACAG---TCTCG---CGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGA 180010
Query 79301 AAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGT 79360
| | || || |||||||||| ||||| |||||||||| |||||||||||| |||||
Sbjct 180011 ATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGT 180070
Query 79361 CCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGT 79420
||| | | ||| || |||||||||||| || |||||||| || |||||| |
Sbjct 180071 TGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGAT 180130
Query 79421 CGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGT 79480
|||| || | |||||| | ||| |||||| ||||| || || ||| | | || ||
Sbjct 180131 CGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGT 180190
Query 79481 CGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGT 79540
| |||||||| ||||| || ||||||||||| | ||| |||||| ||| |||||||
Sbjct 180191 CAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGT 180250
Query 79541 TGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGC 79600
||| || || || ||||||||| | || ||||||||||| | || || | | |
Sbjct 180251 CGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTC 180310
Query 79601 CGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATG 79659
|||| || || ||| || || | || |||||| | ||| || || || ||
Sbjct 180311 CGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATG-CGGTGCACGTTGAGGCCAATA 180369
Query 79660 CCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATC 79719
|| || | ||||||||| ||| || |||||| || ||||| ||||| |||||
Sbjct 180370 CCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATG 180429
Query 79720 GAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG-GTTGTTCGTACCGGC 79778
||| |||||||| ||| |||||||| |||||| ||||| | || | || || ||
Sbjct 180430 CTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT-GTGCCCGC 180488
Query 79779 GTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838
|||||| | ||||||| ||||| |||||| ||||||| ||| ||||| |||||
Sbjct 180489 GTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTC 180548
Query 79839 CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG 79898
|| | | || ||| |||||||| ||||| || || || ||||||| | || ||
Sbjct 180549 GATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 180608
Query 79899 -GGGCGTCTCGCCGACATT 79916
||||| |||| |||| ||
Sbjct 180609 TGGGCG-CTCGGCGACCTT 180626
Score = 416 bits (460), Expect = 3e-111
Identities = 1140/1725 (66%), Gaps = 35/1725 (2%)
Strand=Plus/Minus
Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175
||||||| || || || ||||| || ||||| ||| || | | | |||||| ||||
Sbjct 180598 TCATGCGTGTTGCTGTTGGCATTCACGGCGATGACATCGAGAAGGCCATCGAGACCTACG 180539
Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235
|| ||| || |||| |||||| ||||| ||||||| | |||||||| || || |
Sbjct 180538 ACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAACGCGGGCAC-A 180480
Query 19236 ACAAC-CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294
|| | || || |||||| || ||||| | | |||||||| |||||||| || |||
Sbjct 180479 CCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAGCATCGACGGC 180420
Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354
|| ||||| || |||||| || ||| ||||||||| | || ||||| || ||
Sbjct 180419 ATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGGTATTGGCCTC 180360
Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413
|| ||| | || || | | ||| || ||| ||| || |||||| | | |
Sbjct 180359 AACGTGCACCGC-ATTCGTGCTACTGGCTCATACATCGGTGGCACTAACGGAACATCTAA 180301
Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473
||| || | || |||||||| || | ||||||||| || | || ||| ||||||| ||
Sbjct 180300 TGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCGACCAGGGTGG 180241
Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533
| ||| || || | ||||||||||||||||||||||||||||| |||||| | |
Sbjct 180240 CAACAAGCGTCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTGACGTCTTTGG 180181
Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593
||||| || |||||| |||||| || | |||||| | ||| |||||| ||||||
Sbjct 180180 CTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGATCTCTTCTA 180121
Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653
|| |||||||||| ||||| |||||| || ||| | | ||| | ||| ||
Sbjct 180120 CGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTTCAAGACAACGGCAACTGGACACT 180061
Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTT 19713
|||||||||| |||| ||||||||||| |||| |||||||| || | ||| | | |
Sbjct 180060 GATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTCGAAGCTCT 180001
Query 19714 GTACCGGACTTACGTAGCCCAGGGC-CGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCT 19772
|||| || |||| ||| | || || | || || || || | | | |
Sbjct 180000 GTACGAGAGCTACGAGAAGCAGAACAAGGGTCGCG-AGACTGTTCGCGCACAAAAGCTTT 179942
Query 19773 GGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACG 19832
|| || | |||| | ||| |||||| || | || | ||| |||||||||||
Sbjct 179941 GGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTTTATGCTCTACAAGGACG 179882
Query 19833 CCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTA 19892
| ||| |||| || ||||||||| |||| | ||| ||||||||||| |
Sbjct 179881 CTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTCCAACCTGTGCA 179822
Query 19893 CTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGT 19952
|||| || ||||| || || || ||| || || || || |||| || ||
Sbjct 179821 CTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTGCAACTTGGCTTCTCTTG 179762
Query 19953 GCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGG 20006
|||||| |||| || ||||||| | || ||||| || | |||| |
Sbjct 179761 CCCTGCCTTCTTTTGTCGACTACAAGGCCGGCGTGTTTGACTTCAAGAAGCTCCACGAAG 179702
Query 20007 TGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCG 20066
| || | ||||||||| || || |||| ||||||| ||| ||||| ||
Sbjct 179701 TCACACAGGTCGTCACCCGCAACTTGAACAAGATCATCGAGGTCAACCACTACCCTGTCG 179642
Query 20067 AGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGG 20126
| | ||| ||| || | |||||||| || |||| || || || || || || |
Sbjct 179641 AAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATCGGTATGGGTGTTCAAGGTCTTG 179582
Query 20127 CCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACA 20186
|||| | ||| | ||| |||| | ||||| | | || |||||||||
Sbjct 179581 CCGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCAGACGAAGCTAAGAAGCTCAACA 179522
Query 20187 AGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAG 20246
||||||||| || | ||||| || || ||| || ||||| |||| || |
Sbjct 179521 TCCAAATCTTCGAGACCATCTACCATGCTGCTCTCACTTCCTCATGCGACATCGCAAAGG 179462
Query 20247 AGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGG 20306
| || || ||| |||| | | | || || |||| ||| |||||||||||||| |
Sbjct 179461 AACTTGGTCCTTACAAGACCTACGAAGGATCTCCCGTATCCCAGGGTATCCTCCAGTACG 179402
Query 20307 ACATGTGGGGCGTCACTGAGAATGAGTTTTG-----GAGCG-CCCTCAAGGTTGAGATCA 20360
| |||||| ||||| | ||| | || | ||| | || |||| ||||
Sbjct 179401 ATATGTGGAATGTCACACCTACTGACCTCTGGGACTGGGCGTCTCTGAAGGAGAAGATTG 179342
Query 20361 AGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCC 20420
||||| | ||||||||| ||||| | || |||||||| || ||||| || | |
Sbjct 179341 CTGAGCACGGTGTACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCAC 179282
Query 20421 AGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTA 20480
|||| |||| ||||||||| |||||||| ||||| |||||||||| | || |||
Sbjct 179281 AGATTCTGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTG 179222
Query 20481 CACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGG-TCCGCGA----CTTGCAGAA 20535
|| || ||||||||| || ||| ||| | | ||| | | | | |||| | |
Sbjct 179221 TCCTCGCTGGTGAGTTC--CA-GGTTGTCAA-CCCATGGTTGCTCAAGGACCTTGTCG-A 179167
Query 20536 GATCGATATGTGGTCGCCCAAAATTAAGAATGAAAT--TGTCCGA-GCCGGCGGGAGCGT 20592
|| | | ||||||| || || ||||| || | |||| | || || |
Sbjct 179166 CATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCATCGCCGATGGAGGTTCGATTG- 179108
Query 20593 CCAGGCATT--GGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATC 20650
||||| ||| | ||||| || | ||| | |||||| |||||| ||||| |||
Sbjct 179107 CCAGG-ATTCCCAACATCCCTGAGGAGACAAAGACCCTTTACAAGACCGTCTGGGAGATC 179049
Query 20651 CCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAG 20710
| ||| || ||||| || ||||| || || || || || | ||| |||||||| |||
Sbjct 179048 TCGCAGCGAAGGATCATTGAGATGGCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAG 178989
Query 20711 TCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTAC 20770
||||| || || |||| || | || | ||| ||| | | || ||||| |
Sbjct 178988 TCGCTAAACATCCACATGAAGGAGCCTACTATGGGCAAGATCACTTCTATGCACTTTGCT 178929
Query 20771 GGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815
|||||| | || |||||||| |||||||||||||| || |||
Sbjct 178928 GGCTGGAAGGCTGGTCTCAAGACTGGCATGTACTATCTCCGTACC 178884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548521049461680
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