Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq88 250 3e-61
seq377 104 3e-17
>seq88
Length=290544
Score = 250 bits (276), Expect = 3e-61
Identities = 390/545 (72%), Gaps = 12/545 (2%)
Strand=Plus/Minus
Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302
||||| ||||||| ||| ||||||||||| || |||||| |||| || ||||||||
Sbjct 180548 GAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAAC 180489
Query 53303 GCTGGTACGA-ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361
|| || || |||||| || |||||| |||||||| | | |||||||| |||
Sbjct 180488 GCGGGCACACCATCACCA-CAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAG 180430
Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421
||||||||||| ||||| || |||||| ||||| ||||||||| | || ||
Sbjct 180429 CATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGG 180370
Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480
||| || || || ||| | | | ||||| | ||| || ||| || || ||||
Sbjct 180369 TATTGGCCTCAACGTGCACCG-CATTCGTGCTACTGGCTCATACATCGGTGGCACTAACG 180311
Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540
| | |||| || | || |||||||| || | ||||||||| || || || |||
Sbjct 180310 GAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCG 180251
Query 53541 ACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599
|||||||||| ||||| | ||| | | |||||||||||||||||||| ||||||||
Sbjct 180250 ACCAGGGTGGCAACAAGCGTCCAGGTGCC-TTCGCCATCTACCTCGAGCCATGGCACGCT 180192
Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659
||| | | | || || || ||||| ||| || || | || ||| | ||| ||
Sbjct 180191 GACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGC 180132
Query 53660 GACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GAC 53716
|| || || ||| |||||||||||||| |||||||||||| || ||| ||| ||
Sbjct 180131 GATCTCTTCTAC-GCTCTGTGGATTCCTGACCTCTTCATG--AAGCGTGTTCAAGACAAC 180075
Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776
| | ||| ||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 180074 GGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAA 180015
Query 53777 GAGTT 53781
|| ||
Sbjct 180014 GAATT 180010
Score = 125 bits (138), Expect = 8e-24
Identities = 301/448 (67%), Gaps = 7/448 (2%)
Strand=Plus/Minus
Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541
|||||||||| |||||| | || || |||||||| || || || | ||||| ||||||
Sbjct 179329 TACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCA 179270
Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601
|||||||| |||||||| ||||| |||||||||| ||||| ||| || ||||
Sbjct 179269 ACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTG 179210
Query 55602 AGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACC 55661
|||| | ||||| | |||||||||| | || ||||
Sbjct 179209 AGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTG 179150
Query 55662 CGCAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGT--CCAGAAT-CTGGAGATT 55717
| | || |||| ||| | || || || || || | |||| || | | ||
Sbjct 179149 AGAACATGAAGAACCGTATCATCGCCGAT-GGAGGTTCGATTGCCAGGATTCCCAACATC 179091
Query 55718 CCTCTGCGTCTCAAGGAGA-TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGAT 55776
||| | | ||| || ||||| ||| || |||||||| | ||| || | ||
Sbjct 179090 CCTGAG-GAGACAAAGACCCTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGGATCAT 179032
Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836
||| ||| ||||| |||||||| | ||| |||||||| ||||| || |||||| |||
Sbjct 179031 TGAGATGGCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAGTCGCTAAACATCCACAT 178972
Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896
| || | ||| | ||| |||| | | || ||||||||| || |||||| || ||
Sbjct 178971 GAAGGAGCCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCT 178912
Query 55897 CAAGACGGGTATGTACTATCTGCGGACC 55924
|||||| || ||||||||||| || |||
Sbjct 178911 CAAGACTGGCATGTACTATCTCCGTACC 178884
>seq377
Length=510444
Score = 104 bits (114), Expect = 3e-17
Identities = 136/189 (72%), Gaps = 6/189 (3%)
Strand=Plus/Minus
Query 119002 CTTGCTCATGTTGTCGGTCCAAGATTGCATGTAGATCTTCTTACC------ATCACTAAT 119055
||||||||||||||||||||||| |||| |||| ||||||| ||| |
Sbjct 226665 CTTGCTCATGTTGTCGGTCCAAGTTTGCTTGTACTTCTTCTTCTGCTTCGAATCGACCGT 226606
Query 119056 TTTGATGTTAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACC 119115
| || |||||| | |||||| ||||| ||||| || ||||| || || |||||
Sbjct 226605 CTCGACCGTAAATTCGGTACTGAAAACGTTACAAAGCTTTGCTCCGTAACCATTGCGACC 226546
Query 119116 ACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175
|||||| || ||||| | ||||| |||||||||| || | |||||| ||||||||
Sbjct 226545 ACCGGTAACCTTCTGCTGGTTGTCGTCGTAGTTGGAGGATGTGAGAAGGTGACCAAAGAT 226486
Query 119176 GAGCTCGGG 119184
| ||| ||
Sbjct 226485 CATCTCTGG 226477
Score = 96.9 bits (106), Expect = 4e-15
Identities = 207/304 (68%), Gaps = 4/304 (1%)
Strand=Plus/Minus
Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358
||||| ||| | || || | | ||| |||||||| ||||| ||||||| ||||
Sbjct 228482 AGGCGTGTGTAGATATACCTGGCGCTGGCAGCATCGGCACCACCCTTGAGACGCGAACCG 228423
Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418
|| | ||||| || || | | ||| | |||||||| || |||||||| || || | |
Sbjct 228422 AAGTTACCACTGGGTTCAAGGTAGTTGATGTTGTTGGTACCGACAAAGTTCTGCGCAAGG 228363
Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC-GCCAC 117477
|||||||| || ||||| | || ||||| || ||| | || | ||| | ||
Sbjct 228362 TTGACAATAGTTCCTTGCATAGAAGCTTCACCGTGAGCATAGTCGGTG-GATCCAGAGAC 228304
Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537
| | || || |||| | | ||||| | ||| | | | ||| | ||| |||| ||
Sbjct 228303 GGAACCTGCAAGCTCAACGACCTTGACATCTTTCTTGATGTTTCGCCTGAAACAGGTGTA 228244
Query 117538 AATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGA 117596
| ||||| ||||||| ||||||||||| || | ||| ||||| ||||| ||| |
Sbjct 228243 CAGAACCTTTCGCTGACCGGGCTTCAGACCGTCGACAACG-GAGGGAATCGATCGCACGT 228185
Query 117597 TGTC 117600
||||
Sbjct 228184 TGTC 228181
Score = 84.2 bits (92), Expect = 2e-11
Identities = 200/300 (67%), Gaps = 2/300 (1%)
Strand=Plus/Minus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|| ||| |||| || | || |||||| ||||| ||||| || |||| || ||
Sbjct 228479 CGTGTGTAGATATACCTGGCGCTGGCAGCATCGGCACCACCCTTGAGACGCGAACCGAAG 228420
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
| ||| ||| || ||| ||||| |||||||| || || || ||||| || | ||
Sbjct 228419 TTACCACTGGGTTCAAGGTAGTTGATGTTGTTGGTACCGACAAAGTTCTGCGCAAGGTTG 228360
Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCC-GCGATGTA 152204
||||| || || |||| | ||||||||||| ||| | || | ||| | || | |
Sbjct 228359 ACAATAGTTCCTTGCATAGAAGCTTCACCGTGAGCATA-GTCGGTGGATCCAGAGACGGA 228301
Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264
|| || | || | ||||| | || || | | ||| | ||| ||||| ||| |
Sbjct 228300 ACCTGCAAGCTCAACGACCTTGACATCTTTCTTGATGTTTCGCCTGAAACAGGTGTACAG 228241
Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
||||| ||||| || |||| |||||| || ||| |||||||| ||| | ||||
Sbjct 228240 AACCTTTCGCTGACCGGGCTTCAGACCGTCGACAACGGAGGGAATCGATCGCACGTTGTC 228181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212258410600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |