Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq88 250 3e-61 seq377 104 3e-17 >seq88 Length=290544 Score = 250 bits (276), Expect = 3e-61 Identities = 390/545 (72%), Gaps = 12/545 (2%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||||||| ||| ||||||||||| || |||||| |||| || |||||||| Sbjct 180548 GAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAAC 180489 Query 53303 GCTGGTACGA-ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || |||||| || |||||| |||||||| | | |||||||| ||| Sbjct 180488 GCGGGCACACCATCACCA-CAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAG 180430 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||||||||| ||||| || |||||| ||||| ||||||||| | || || Sbjct 180429 CATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGG 180370 Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||| || || || ||| | | | ||||| | ||| || ||| || || |||| Sbjct 180369 TATTGGCCTCAACGTGCACCG-CATTCGTGCTACTGGCTCATACATCGGTGGCACTAACG 180311 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | |||| || | || |||||||| || | ||||||||| || || || ||| Sbjct 180310 GAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCG 180251 Query 53541 ACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 |||||||||| ||||| | ||| | | |||||||||||||||||||| |||||||| Sbjct 180250 ACCAGGGTGGCAACAAGCGTCCAGGTGCC-TTCGCCATCTACCTCGAGCCATGGCACGCT 180192 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659 ||| | | | || || || ||||| ||| || || | || ||| | ||| || Sbjct 180191 GACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGC 180132 Query 53660 GACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GAC 53716 || || || ||| |||||||||||||| |||||||||||| || ||| ||| || Sbjct 180131 GATCTCTTCTAC-GCTCTGTGGATTCCTGACCTCTTCATG--AAGCGTGTTCAAGACAAC 180075 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776 | | ||| ||||||||||||||||||||||| |||||| | |||||||||||| Sbjct 180074 GGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAA 180015 Query 53777 GAGTT 53781 || || Sbjct 180014 GAATT 180010 Score = 125 bits (138), Expect = 8e-24 Identities = 301/448 (67%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 |||||||||| |||||| | || || |||||||| || || || | ||||| |||||| Sbjct 179329 TACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCA 179270 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601 |||||||| |||||||| ||||| |||||||||| ||||| ||| || |||| Sbjct 179269 ACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTG 179210 Query 55602 AGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACC 55661 |||| | ||||| | |||||||||| | || |||| Sbjct 179209 AGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTG 179150 Query 55662 CGCAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGT--CCAGAAT-CTGGAGATT 55717 | | || |||| ||| | || || || || || | |||| || | | || Sbjct 179149 AGAACATGAAGAACCGTATCATCGCCGAT-GGAGGTTCGATTGCCAGGATTCCCAACATC 179091 Query 55718 CCTCTGCGTCTCAAGGAGA-TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGAT 55776 ||| | | ||| || ||||| ||| || |||||||| | ||| || | || Sbjct 179090 CCTGAG-GAGACAAAGACCCTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGGATCAT 179032 Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836 ||| ||| ||||| |||||||| | ||| |||||||| ||||| || |||||| ||| Sbjct 179031 TGAGATGGCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAGTCGCTAAACATCCACAT 178972 Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 | || | ||| | ||| |||| | | || ||||||||| || |||||| || || Sbjct 178971 GAAGGAGCCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCT 178912 Query 55897 CAAGACGGGTATGTACTATCTGCGGACC 55924 |||||| || ||||||||||| || ||| Sbjct 178911 CAAGACTGGCATGTACTATCTCCGTACC 178884 >seq377 Length=510444 Score = 104 bits (114), Expect = 3e-17 Identities = 136/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 119002 CTTGCTCATGTTGTCGGTCCAAGATTGCATGTAGATCTTCTTACC------ATCACTAAT 119055 ||||||||||||||||||||||| |||| |||| ||||||| ||| | Sbjct 226665 CTTGCTCATGTTGTCGGTCCAAGTTTGCTTGTACTTCTTCTTCTGCTTCGAATCGACCGT 226606 Query 119056 TTTGATGTTAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACC 119115 | || |||||| | |||||| ||||| ||||| || ||||| || || ||||| Sbjct 226605 CTCGACCGTAAATTCGGTACTGAAAACGTTACAAAGCTTTGCTCCGTAACCATTGCGACC 226546 Query 119116 ACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 |||||| || ||||| | ||||| |||||||||| || | |||||| |||||||| Sbjct 226545 ACCGGTAACCTTCTGCTGGTTGTCGTCGTAGTTGGAGGATGTGAGAAGGTGACCAAAGAT 226486 Query 119176 GAGCTCGGG 119184 | ||| || Sbjct 226485 CATCTCTGG 226477 Score = 96.9 bits (106), Expect = 4e-15 Identities = 207/304 (68%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 ||||| ||| | || || | | ||| |||||||| ||||| ||||||| |||| Sbjct 228482 AGGCGTGTGTAGATATACCTGGCGCTGGCAGCATCGGCACCACCCTTGAGACGCGAACCG 228423 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | ||||| || || | | ||| | |||||||| || |||||||| || || | | Sbjct 228422 AAGTTACCACTGGGTTCAAGGTAGTTGATGTTGTTGGTACCGACAAAGTTCTGCGCAAGG 228363 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC-GCCAC 117477 |||||||| || ||||| | || ||||| || ||| | || | ||| | || Sbjct 228362 TTGACAATAGTTCCTTGCATAGAAGCTTCACCGTGAGCATAGTCGGTG-GATCCAGAGAC 228304 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537 | | || || |||| | | ||||| | ||| | | | ||| | ||| |||| || Sbjct 228303 GGAACCTGCAAGCTCAACGACCTTGACATCTTTCTTGATGTTTCGCCTGAAACAGGTGTA 228244 Query 117538 AATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGA 117596 | ||||| ||||||| ||||||||||| || | ||| ||||| ||||| ||| | Sbjct 228243 CAGAACCTTTCGCTGACCGGGCTTCAGACCGTCGACAACG-GAGGGAATCGATCGCACGT 228185 Query 117597 TGTC 117600 |||| Sbjct 228184 TGTC 228181 Score = 84.2 bits (92), Expect = 2e-11 Identities = 200/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || ||| |||| || | || |||||| ||||| ||||| || |||| || || Sbjct 228479 CGTGTGTAGATATACCTGGCGCTGGCAGCATCGGCACCACCCTTGAGACGCGAACCGAAG 228420 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | ||| ||| || ||| ||||| |||||||| || || || ||||| || | || Sbjct 228419 TTACCACTGGGTTCAAGGTAGTTGATGTTGTTGGTACCGACAAAGTTCTGCGCAAGGTTG 228360 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCC-GCGATGTA 152204 ||||| || || |||| | ||||||||||| ||| | || | ||| | || | | Sbjct 228359 ACAATAGTTCCTTGCATAGAAGCTTCACCGTGAGCATA-GTCGGTGGATCCAGAGACGGA 228301 Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264 || || | || | ||||| | || || | | ||| | ||| ||||| ||| | Sbjct 228300 ACCTGCAAGCTCAACGACCTTGACATCTTTCTTGATGTTTCGCCTGAAACAGGTGTACAG 228241 Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| ||||| || |||| |||||| || ||| |||||||| ||| | |||| Sbjct 228240 AACCTTTCGCTGACCGGGCTTCAGACCGTCGACAACGGAGGGAATCGATCGCACGTTGTC 228181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212258410600