Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq88 242 4e-59
seq530 168 8e-37
seq38 107 2e-18
seq7 107 2e-18
seq377 93.3 5e-14
>seq88
Length=290544
Score = 242 bits (268), Expect = 4e-59
Identities = 649/976 (66%), Gaps = 47/976 (5%)
Strand=Plus/Plus
Query 80809 TCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAG 80868
||||||| ||||| |||||| || || ||| |||| || || || || |||| |||
Sbjct 179662 TCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAG 179721
Query 80869 TCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCAC 80922
|| || | |||| ||||| | || ||| || || |||| |||||
Sbjct 179722 TCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAA 179781
Query 80923 ACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA 80982
|| || ||||| |||| | | || |||| || || || ||||||| || ||
Sbjct 179782 ACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGG 179841
Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042
|| ||||| ||||| |||||||| |||| ||||||||||||||||||| ||| |
Sbjct 179842 ATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAG 179901
Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC--GCGCGCCTTGA 81100
||| |||| |||||| ||||| || |||||||||| ||||| || | |||| ||
Sbjct 179902 GGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGC---GA 179958
Query 81101 CCAC-CTTGCGGAATTTGCCTTCGGC--CACATACTTGGCGTA---AGCTTCGTCGAACT 81154
|| || ||| ||| ||| || | | || | |||| ||||||| || |
Sbjct 179959 ACAGTCTCGCGACCCTTG--TTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCG---AATT 180013
Query 81155 TGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGG 81214
|||||| | || | |||| | ||||||||||| ||||||||||| |||||
Sbjct 180014 CTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGT--- 180070
Query 81215 TGTCGTTCTCT---ACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGT 81271
|| |||| ||| ||| ||||||||| |||||| ||||| || ||| ||| || |
Sbjct 180071 TGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGAT 180130
Query 81272 CGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGAT 81329
|||| |||||| ||||||| | || ||||| ||||| || || ||| | | ||
Sbjct 180131 CGCG--AGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGAC 180188
Query 81330 GTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GCCACC 81383
||| || ||||||||||| || || | ||||| | | ||| |||| ||||||
Sbjct 180189 GTCAGCGTGCCATGGCTCGAGGTAGATGGCGA-AGGCACCT--GGACGCTTGTTGCCACC 180245
Query 81384 CTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGA 81443
||||| ||| || || ||||| ||| ||||||| | ||| || |||| ||||| ||
Sbjct 180246 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGA 180305
Query 81444 CTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGA 81501
||||| || || |||| || || | || || | | ||| ||| ||
Sbjct 180306 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 180363
Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561
|| || || || | ||| || ||| ||||| || | || || ||||| ||
Sbjct 180364 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 180423
Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621
|||||||| || | |||||||| | | ||| || ||||| || || | || |
Sbjct 180424 TCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTG 180483
Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681
|| || ||||||| || || | ||||| |||| || | ||||| ||| |||
Sbjct 180484 CCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAG 180543
Query 81682 GTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATG 81741
|| || || | || || || |||||||| || | ||| |||||||| | ||||
Sbjct 180544 GTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATG 180603
Query 81742 TACTG-GGGCGTCTCG 81756
| || ||||| ||||
Sbjct 180604 TGTTGTGGGCG-CTCG 180618
Score = 107 bits (118), Expect = 2e-18
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| || |||||||||||||| |||||||| || ||||||||| | ||||||||||
Sbjct 178885 GTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAA 178944
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157
||| ||| | | || || | || |||| |||||| || ||||||||||| |||
Sbjct 178945 GTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATG 179004
Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAAT 80189
||||| ||||| || || ||||| ||||| ||
Sbjct 179005 AAAGCACCACGGTCAGCGGCCATCTCAATGAT 179036
>seq530
Length=496674
Score = 168 bits (186), Expect = 8e-37
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| |||||||| ||||| ||||| | || || ||||| |
Sbjct 171277 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 171336
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||| | || || |||||||||||||| || ||||| ||||||
Sbjct 171337 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 171396
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||||||||| || || || | || || || ||||||| ||
Sbjct 171397 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 171456
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
|||| ||||| || ||||| || | || | |||||||| || ||||||
Sbjct 171457 ATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGCGGACAA 171507
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || |||||||| || || || ||||| || ||| |
Sbjct 171049 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 171108
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| | || || || ||||||||||| |||||||| |||||
Sbjct 171109 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 171168
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| | || || | ||||| || | ||||| ||
Sbjct 171169 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 171228
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| ||||| ||||| | || | ||||| || |||||
Sbjct 171229 ATCCAAAAGGAGTCCACACTTCACTTGGTGCTTCGTCTCCGTGGTGG 171275
Score = 145 bits (160), Expect = 9e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||| ||||| || || || ||||||||||| ||| | || | ||| | |||
Sbjct 170564 ACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATGTCAAGAGC 170623
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| ||||| |||||||||||||| | || || || || |||
Sbjct 170624 AAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 170683
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||||| ||| ||||| | ||||| || |||| |||||||| || || |||
Sbjct 170684 CAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCTGCAT 170743
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | |||||||| || ||
Sbjct 170744 CTCGTCCTCCGTCTTCGTGGAGG 170766
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || |||||||||||||||||| || | ||| | || | ||| |
Sbjct 170845 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 170904
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || || ||||||||||| || ||||| || ||||| || || || || || || |||
Sbjct 170905 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 170964
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||||||||| | || ||||| | ||||| || | || ||||| ||||| || ||
Sbjct 170965 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 171024
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | || || ||||||||
Sbjct 171025 CTTGTCCTCCGCCTGCGCGGTGG 171047
>seq38
Length=207270
Score = 107 bits (118), Expect = 2e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||| | || || |||||||||||||| ||||| || ||||| ||||| || || || ||
Sbjct 118611 AAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCC 118552
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| |||||||||||||||| || || || | ||||| || |||| ||||| || ||
Sbjct 118551 GGAAAGCAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACC 118492
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || | ||| | ||||| || |||||
Sbjct 118491 CTCCACTTGGTCCTCCGTCTCCGTGGTGG 118463
>seq7
Length=239904
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| ||||| || |||||||||||||| || || || || ||||| ||||||
Sbjct 146 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 205
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|||| || || || | ||||| || |||| ||||| ||||| || || | ||| |
Sbjct 206 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTC 265
Query 27619 CGTCTTCGCGGTGG 27632
|| ||||| |||||
Sbjct 266 CGCCTTCGTGGTGG 279
>seq377
Length=510444
Score = 93.3 bits (102), Expect = 5e-14
Identities = 131/183 (72%), Gaps = 6/183 (3%)
Strand=Plus/Plus
Query 30379 ATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAGGAGCAGCGCGTGACGGGT 30438
|| ||||| |||||| | ||| |||||||||| ||||| | ||||| || || |||
Sbjct 226486 ATCTTTGGTCACCTTCTCACATCCTCCAACTACGACGACAACCAGCAGAAGGTTACCGGT 226545
Query 30439 GGACGAAATGGCTACGGTGCAAAGCTCGCCAACGTTTTCAGTTCCCTATTCAAAATCAAA 30498
|| || ||||| ||||| |||||||| |||||||||||| || ||| | || |
Sbjct 226546 GGTCGCAATGGTTACGGAGCAAAGCTTTGTAACGTTTTCAGTACCGAATTTACGGTCGAG 226605
Query 30499 A--TTAGTGACG----GGAAGAAGATATATGAGCAGACTTGGACAGATAACATGAGCAAG 30552
| | | || |||||||| || |||| |||||||| || ||||||||||||
Sbjct 226606 ACGGTCGATTCGAAGCAGAAGAAGAAGTACAAGCAAACTTGGACCGACAACATGAGCAAG 226665
Query 30553 GTG 30555
||
Sbjct 226666 ATG 226668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570306500502640
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