Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq88 242 4e-59 seq530 168 8e-37 seq38 107 2e-18 seq7 107 2e-18 seq377 93.3 5e-14 >seq88 Length=290544 Score = 242 bits (268), Expect = 4e-59 Identities = 649/976 (66%), Gaps = 47/976 (5%) Strand=Plus/Plus Query 80809 TCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAG 80868 ||||||| ||||| |||||| || || ||| |||| || || || || |||| ||| Sbjct 179662 TCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAG 179721 Query 80869 TCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCAC 80922 || || | |||| ||||| | || ||| || || |||| ||||| Sbjct 179722 TCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAA 179781 Query 80923 ACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA 80982 || || ||||| |||| | | || |||| || || || ||||||| || || Sbjct 179782 ACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGG 179841 Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042 || ||||| ||||| |||||||| |||| ||||||||||||||||||| ||| | Sbjct 179842 ATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAG 179901 Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC--GCGCGCCTTGA 81100 ||| |||| |||||| ||||| || |||||||||| ||||| || | |||| || Sbjct 179902 GGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGC---GA 179958 Query 81101 CCAC-CTTGCGGAATTTGCCTTCGGC--CACATACTTGGCGTA---AGCTTCGTCGAACT 81154 || || ||| ||| ||| || | | || | |||| ||||||| || | Sbjct 179959 ACAGTCTCGCGACCCTTG--TTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCG---AATT 180013 Query 81155 TGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGG 81214 |||||| | || | |||| | ||||||||||| ||||||||||| ||||| Sbjct 180014 CTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGT--- 180070 Query 81215 TGTCGTTCTCT---ACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGT 81271 || |||| ||| ||| ||||||||| |||||| ||||| || ||| ||| || | Sbjct 180071 TGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGAT 180130 Query 81272 CGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGAT 81329 |||| |||||| ||||||| | || ||||| ||||| || || ||| | | || Sbjct 180131 CGCG--AGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGAC 180188 Query 81330 GTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GCCACC 81383 ||| || ||||||||||| || || | ||||| | | ||| |||| |||||| Sbjct 180189 GTCAGCGTGCCATGGCTCGAGGTAGATGGCGA-AGGCACCT--GGACGCTTGTTGCCACC 180245 Query 81384 CTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGA 81443 ||||| ||| || || ||||| ||| ||||||| | ||| || |||| ||||| || Sbjct 180246 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGA 180305 Query 81444 CTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGA 81501 ||||| || || |||| || || | || || | | ||| ||| || Sbjct 180306 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 180363 Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 || || || || | ||| || ||| ||||| || | || || ||||| || Sbjct 180364 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 180423 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 |||||||| || | |||||||| | | ||| || ||||| || || | || | Sbjct 180424 TCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTG 180483 Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681 || || ||||||| || || | ||||| |||| || | ||||| ||| ||| Sbjct 180484 CCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAG 180543 Query 81682 GTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATG 81741 || || || | || || || |||||||| || | ||| |||||||| | |||| Sbjct 180544 GTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATG 180603 Query 81742 TACTG-GGGCGTCTCG 81756 | || ||||| |||| Sbjct 180604 TGTTGTGGGCG-CTCG 180618 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || |||||||||||||| |||||||| || ||||||||| | |||||||||| Sbjct 178885 GTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAA 178944 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | || |||| |||||| || ||||||||||| ||| Sbjct 178945 GTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATG 179004 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAAT 80189 ||||| ||||| || || ||||| ||||| || Sbjct 179005 AAAGCACCACGGTCAGCGGCCATCTCAATGAT 179036 >seq530 Length=496674 Score = 168 bits (186), Expect = 8e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| |||||||| ||||| ||||| | || || ||||| | Sbjct 171277 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 171336 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || |||||||||||||| || ||||| |||||| Sbjct 171337 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 171396 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| || || || | || || || ||||||| || Sbjct 171397 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 171456 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || ||||| || | || | |||||||| || |||||| Sbjct 171457 ATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGCGGACAA 171507 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || || || ||||| || ||| | Sbjct 171049 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 171108 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || || || ||||||||||| |||||||| ||||| Sbjct 171109 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 171168 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| | || || | ||||| || | ||||| || Sbjct 171169 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 171228 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| ||||| | || | ||||| || ||||| Sbjct 171229 ATCCAAAAGGAGTCCACACTTCACTTGGTGCTTCGTCTCCGTGGTGG 171275 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || || ||||||||||| ||| | || | ||| | ||| Sbjct 170564 ACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATGTCAAGAGC 170623 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| |||||||||||||| | || || || || ||| Sbjct 170624 AAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 170683 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| ||| ||||| | ||||| || |||| |||||||| || || ||| Sbjct 170684 CAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCTGCAT 170743 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | |||||||| || || Sbjct 170744 CTCGTCCTCCGTCTTCGTGGAGG 170766 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || |||||||||||||||||| || | ||| | || | ||| | Sbjct 170845 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 170904 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || ||||||||||| || ||||| || ||||| || || || || || || ||| Sbjct 170905 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 170964 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||||||||| | || ||||| | ||||| || | || ||||| ||||| || || Sbjct 170965 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 171024 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || |||||||| Sbjct 171025 CTTGTCCTCCGCCTGCGCGGTGG 171047 >seq38 Length=207270 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | || || |||||||||||||| ||||| || ||||| ||||| || || || || Sbjct 118611 AAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCC 118552 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || |||||||||||||||| || || || | ||||| || |||| ||||| || || Sbjct 118551 GGAAAGCAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACC 118492 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || | ||| | ||||| || ||||| Sbjct 118491 CTCCACTTGGTCCTCCGTCTCCGTGGTGG 118463 >seq7 Length=239904 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || || || ||||| |||||| Sbjct 146 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 205 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || || | ||||| || |||| ||||| ||||| || || | ||| | Sbjct 206 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTC 265 Query 27619 CGTCTTCGCGGTGG 27632 || ||||| ||||| Sbjct 266 CGCCTTCGTGGTGG 279 >seq377 Length=510444 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 30379 ATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAGGAGCAGCGCGTGACGGGT 30438 || ||||| |||||| | ||| |||||||||| ||||| | ||||| || || ||| Sbjct 226486 ATCTTTGGTCACCTTCTCACATCCTCCAACTACGACGACAACCAGCAGAAGGTTACCGGT 226545 Query 30439 GGACGAAATGGCTACGGTGCAAAGCTCGCCAACGTTTTCAGTTCCCTATTCAAAATCAAA 30498 || || ||||| ||||| |||||||| |||||||||||| || ||| | || | Sbjct 226546 GGTCGCAATGGTTACGGAGCAAAGCTTTGTAACGTTTTCAGTACCGAATTTACGGTCGAG 226605 Query 30499 A--TTAGTGACG----GGAAGAAGATATATGAGCAGACTTGGACAGATAACATGAGCAAG 30552 | | | || |||||||| || |||| |||||||| || |||||||||||| Sbjct 226606 ACGGTCGATTCGAAGCAGAAGAAGAAGTACAAGCAAACTTGGACCGACAACATGAGCAAG 226665 Query 30553 GTG 30555 || Sbjct 226666 ATG 226668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306500502640