Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq530 100 7e-16 >seq530 Length=496674 Score = 100 bits (110), Expect = 7e-16 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || || || ||||| || || |||||||| |||| | || | || || Sbjct 171033 GAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTC 170974 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| |||||||||||||| | ||||| |||| | ||| || ||||| Sbjct 170973 CTCGAGTTGCTTT--CCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTG 170916 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || ||| ||||| | || | | |||| || ||| || |||||||| || Sbjct 170915 TCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATG 170856 Query 152070 GTTTTGCCCGT 152080 || ||||| || Sbjct 170855 GTCTTGCCGGT 170845 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||||||||| || ||||||||||| || | | |||| || ||||| | Sbjct 171483 CAAG-TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCA 171425 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||| | | ||| || ||||| || || | Sbjct 171424 GCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGA 171365 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | |||| | ||| ||||| | ||||| || || | Sbjct 171364 TCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTC 171305 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| || |||| |||||| Sbjct 171304 CGGTAAGAGTCTTGACAAAGATCTGCAT 171277 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/213 (71%), Gaps = 11/213 (5%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| |||||||||||||| |||| | ||| | || ||||| | Sbjct 171255 CAAG-TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCA 171197 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| ||||||||||| || | ||| ||||||| | || || ||||| ||||| Sbjct 171196 ACTGCTTT--CCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTG 171139 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATAGT 152071 || || ||||| | || | |||| ||| || || || || || || || Sbjct 171138 GATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGA---TTCCACCTCGAGCGTGATGGT 171082 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||||| ||||| Sbjct 171081 CTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| || ||||| || || ||||||||||| |||| | || | ||||| Sbjct 170752 GAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 170693 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| | | ||||||||| | | || || ||||| || Sbjct 170692 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 170633 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | |||| ||| ||| || || || || || || Sbjct 170632 CTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGT 170573 Query 152072 TTTGCCCGTGA 152082 || || |||| Sbjct 170572 CTTTCCGGTGA 170562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812713519037