Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq530 149 5e-31
>seq530
Length=496674
Score = 149 bits (164), Expect = 5e-31
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| |||||| ||| |||||||||||||||||| |||| ||| || |||| ||
Sbjct 171258 CACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTC 171199
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| ||||| ||||| | |||||| || || | ||| | ||| ||||| ||
Sbjct 171198 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTG 171139
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||| | | | || |||||| ||||||||||| | ||| || |||||
Sbjct 171138 GATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTT 171079
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||||||| ||||||||||||||
Sbjct 171078 GCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049
Score = 120 bits (132), Expect = 2e-22
Identities = 155/212 (73%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || || |||||| ||||||||||| || | ||| || |||| ||
Sbjct 171486 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 171427
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| || || ||||| | ||||||||| || | ||| | ||| ||||| |||
Sbjct 171426 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 171367
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | || |||||| || || || |||| ||||| |||
Sbjct 171366 GATCTTGGACTTTACATTGT--CGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTC 171309
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || ||||| || ||||| |||||
Sbjct 171308 TTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277
Score = 91.5 bits (100), Expect = 1e-13
Identities = 124/171 (73%), Gaps = 4/171 (2%)
Strand=Plus/Minus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||| ||||||||||| |||| || ||| | || || |||||||| ||||| |||
Sbjct 170730 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAG 170671
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264
||||| |||||||| |||| || | || ||||| ||| ||||| ||| || ||
Sbjct 170670 ATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTG 170611
Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315
| | || ||||| | || || ||||| | || || |||||||| ||||
Sbjct 170610 T--CGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGTGA 170562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359988000101499
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |