Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq530 145 2e-29 seq38 104 6e-17 seq7 91.5 4e-13 >seq530 Length=496674 Score = 145 bits (160), Expect = 2e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| || ||||| || || ||||||||||| |||||||| | Sbjct 170845 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 170904 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| || || ||||||||||| |||||||| ||||||||||||||||| Sbjct 170905 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 170964 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| || || | || || |||| || ||| | || || || || |||||||| Sbjct 170965 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 171024 Query 178125 CTTGT 178129 ||||| Sbjct 171025 CTTGT 171029 Score = 143 bits (158), Expect = 6e-29 Identities = 158/208 (76%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 ||||| ||||| || || || || || || || ||||| ||||||||||| |||| Sbjct 171052 CAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC--- 171108 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || || |||||||| ||||| || ||||| || || || ||||||||||| Sbjct 171109 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 171168 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||||||||| ||| | ||||| || | ||||| |||| || ||| Sbjct 171169 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 171228 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||||| || || ||||| || |||| Sbjct 171229 ATCCAAAAGGAGTCCACACTTCA-CTTG 171255 Score = 134 bits (148), Expect = 3e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| ||||| || |||||||||||||| || || ||||| ||||| || ||||| Sbjct 170562 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATGTCAAGA 170621 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || || || || |||||||| || | ||||||||||| | Sbjct 170622 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCA 170681 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || ||||| | || || |||| || ||| |||| || ||||| || |||| Sbjct 170682 AGCAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCTGC 170741 Query 178123 ATCTTGT 178129 |||| || Sbjct 170742 ATCTCGT 170748 >seq38 Length=207270 Score = 104 bits (114), Expect = 6e-17 Identities = 107/139 (77%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| |||||||| || || || || |||||||| || || || Sbjct 118620 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTG 118561 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 |||||||||||||| || ||||| ||||| | ||||| |||| || ||| |||| || Sbjct 118560 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 118501 Query 178110 GAATCAACACTGCATCTTG 178128 || ||||| || || |||| Sbjct 118500 GAGTCAACCCTCCA-CTTG 118483 >seq7 Length=239904 Score = 91.5 bits (100), Expect = 4e-13 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || || || ||||||||||| || || |||||||||||||| |||||||| Sbjct 146 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 205 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||| | |||||| | || || ||| |||| || || || || || || |||| Sbjct 206 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCA-CTTG 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203722763725118