Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2473 150 2e-31 seq2726 105 7e-18 seq2257 98.7 1e-15 >seq2473 Length=337605 Score = 150 bits (166), Expect = 2e-31 Identities = 209/287 (73%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||||||||| ||||| || || |||||||| | || || | || || Sbjct 139697 ATTTGGCAAATGTACAAAAAAGCCGAAGCATCCTTCTGGACTGCTGAAGAAATCGATTTG 139756 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGC---GCTTGAACGACAACGAGCGCCATTTCATCAA 116751 ||||| || | | | |||||| | | | |||||||| | || ||| | |||||| Sbjct 139757 TCCAAAGATCTCCAT-GACTGGAACCATCGACTGAACGACGATGAACGCTACTTCATCTC 139815 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 | ||| |||||||| ||||||||| ||| ||||||||||| |||||||| |||||| | Sbjct 139816 TCGCGTCCTGGCCTTCTTCGCCGCCTCCGATGGCATCGTCAATGAGAATCTTGTCGAGAG 139875 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| || | || || ||| | | ||||| || ||||| ||||| || |||||| | Sbjct 139876 ATTCAGCGC-TGAAGTTCAGATTCCAGAGGCTCGTTGCTTTTACGGATTCCAGATCATGA 139934 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | || || || | || || |||||| ||||||||| Sbjct 139935 TGGAGAATATCCATTCCGAGACATACTCTCTCCTCATTGACACGTAC 139981 Score = 114 bits (126), Expect = 1e-20 Identities = 260/385 (68%), Gaps = 6/385 (2%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGG--CAGAGAGGCCGCCTTCGGCGAGCG 117039 ||||||| || ||||| | || |||||| | || ||| || | | |||| | |||| Sbjct 140109 AGAAGGCTGACTGGGCCATTCGATGGATC-CAGGATCAG-GAATCGACATTCGCCCAGCG 140166 Query 117040 CCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATT 117099 | || | ||||| || || |||||||| | ||||| ||| ||||| |||| || Sbjct 140167 CTTGATTGCCTTTGCTGCTGTCGAGGGAATTTTCTTCAGCGGCTCCTTCGCTTCCATTTT 140226 Query 117100 TTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAG 117159 ||||| ||||| ||||| || ||||| || || || || ||||| | ||||| | Sbjct 140227 CTGGCTAAAGAAGCGCGGTCTTATGCCTGGTCTTACCTTTTCGAACGAATTGATCTCTCG 140286 Query 117160 GGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC 117219 || |||||||| || ||||||||||| ||||||| || || || || || Sbjct 140287 TGATGAGGGTCTTCACACTGACTTTGCCTGCCTGCTGTTTTCTCACATGCATCATCGGCC 140346 Query 117220 GAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCT 117279 || | | ||| | || |||| || || || | || ||| || ||| | Sbjct 140347 CAGTCCCCAGGCCGTTGAAGCCATTATCACAGAGGCAGTTGAAATTGAGAAGGAATTCTT 140406 Query 117280 CACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACA 117338 ||||| || || || |||| |||||| ||| | || | | | |||| ||||||| Sbjct 140407 GACCGATGCCCTCCCTTGTGC-TCTGCTTGGAATGAACTCCAAGCTCATGTGTCAATACA 140465 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCT 117363 |||||||||| |||||| || |||| Sbjct 140466 TCGAGTTCGTTGCCGACCGGTTGCT 140490 >seq2726 Length=527079 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || ||||||||| |||| || || | | Sbjct 137265 ATGCAGATCTTCGTCAAGACCCTGACGGGAAAGACCATCACCCTCGAGGTGGAGTCTAGT 137206 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| ||||||||||| | |||||| Sbjct 137205 GACACTATTGATAATGTCAAGACCAAGATCCAAGACAAGGAGGGCATCCCTCCTGACCAG 137146 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || |||||||| || || | || ||||| ||||||||| Sbjct 137145 CAACGCTTGATCTTTGCTGGTAAACAGCTTGAAGATGGTCGAACCCTTTCTGACTACAAC 137086 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| | || || || Sbjct 137085 ATTCAGAAGGAGTCTACCCTTCA 137063 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| || ||||| ||||| | || || || | | Sbjct 136508 ATGCAGATTTTCGTGAAAACACTCACTGGAAAAACGATCACGCTGGAAGTTGAGTCATCG 136449 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| ||| |||| || ||||| || || || | |||||| Sbjct 136448 GACACAATCGACAATGTTAAGACAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAG 136389 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||||| |||| || || || ||||| || || | || || || ||| || ||| Sbjct 136388 CAACGACTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGGACGCTTTCCGATTATAAC 136329 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || ||| ||||| | |||||| | ||| | || || Sbjct 136328 ATTCAGAAAGAAAGCACTCTGCACTTGGTGTTGAGATTGCGTGGTGG 136282 >seq2257 Length=132105 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 40691 TGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||| ||||| || |||||||| ||||| || |||||| | || || || | | Sbjct 93609 TGCAAATAGCTTCGTCAAGACGCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGAG 93668 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | ||| || |||| ||||| |||||||||||| | || || Sbjct 93669 CGACACAATCGACAATGTGAAGAGCAAGATTCAAGACAAGGAGGGCATCCCCCCAGATCA 93728 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| ||| || || ||||| || |||| || || | | ||| || || Sbjct 93729 GCAACGATTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGTACTTTGAGCGATTATAA 93788 Query 40869 CATCCAGAAGG 40879 ||||| |||| Sbjct 93789 TATCCAAAAGG 93799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515199396262000