Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2257 98.7 1e-15 seq1061 98.7 1e-15 seq2726 84.2 3e-11 >seq2257 Length=132105 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 ||||||| ||||| ||||| || ||| || |||| || |||||||| || ||||| | Sbjct 93799 CCTTTTGGATATTATAATCGCTCAAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGA 93740 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | ||| ||||| || | || | || ||||||||| ||| | || | | | | | Sbjct 93739 TCAATCGTTGCTGATCTGGGGGGATGCCCTCCTTGTCT-TGAATCTTGCTCTTCACATTG 93681 Query 43114 CC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||||||||| ||||| || | ||||| || ||||| || |||||||| || Sbjct 93680 TCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGCGTCTTGACG 93621 Query 43173 AAG--ATTTGCA 43182 ||| ||||||| Sbjct 93620 AAGCTATTTGCA 93609 >seq1061 Length=321426 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||||| ||||| || |||| || ||||||||||||||||| Sbjct 107749 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 107808 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || ||||||||||| | || | || ||||||||| Sbjct 107809 GATAAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 107847 >seq2726 Length=527079 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| || ||||||| ||||| || |||| || |||||||| || ||||| Sbjct 136774 TCCTTTTGAATGTTATAATCAGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAA 136833 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | || |||||||| | || | || ||||||||| ||| | || || | ||| Sbjct 136834 ATCAAACGTTGCTGGTCAGGAGGAATGCCTTCCTTGTCC-TGAATCTTGGTCTTCACGTT 136892 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || || || ||||| || | |||||||| || || || || ||||| || Sbjct 136893 GTCGATAGTATCAGATGACTCCACCTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTGAC 136952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571795620761000