Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2550 199 4e-46 seq2726 111 1e-19 >seq2550 Length=338734 Score = 199 bits (220), Expect = 4e-46 Identities = 483/729 (66%), Gaps = 2/729 (0%) Strand=Plus/Plus Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTG 23307 ||||||| || | || ||||| ||| |||| || ||| || |||| || |||| | Sbjct 314536 TACTTTTCATAGAGAGCCTCAAACTCGTCACCATAGACA-TCAGCCAACCCTGGCGCCTC 314594 Query 23308 CATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGG 23367 ||||||| | | |||| || || ||||| ||| |||| || | ||| || Sbjct 314595 ATTCGGACAGAACAAGGTCCAATCACCGTTCTTCTCAACTCGTTTCATGAACAAATCTGG 314654 Query 23368 TATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTT 23427 |||| ||||| ||| || || ||||| | ||| || || || ||| |||||| Sbjct 314655 GGTCCAAAGAGCAAGGAAGAGATCACGGGCTCTCACTTCTTCCTTTCCGTGGTTCTTGCG 314714 Query 23428 CAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCC 23487 | ||||| ||| || || | || | |||||| || || ||||| | || || ||||| Sbjct 314715 AAGATCCAGAAATTCAAAGATATCGGAATGCCAAGGTTCAAGGTAGATTGCGAAGGCGCC 314774 Query 23488 CGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCAT 23547 || | || ||||| || ||||| ||||| || || || ||||| | || | ||||| Sbjct 314775 TGGCCGTTTGTTGCCACCTTGATCAACGTATCGAGCGGTATTGTTAAAGACACGGAGCAT 314834 Query 23548 CGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAAC 23607 || | | || || || | ||| | ||| || | | || || | ||||| | Sbjct 314835 AGGTATAATTCCATTAGAAGAGCCATTTGTGCCTGCAATATAGGAGCCAGTGGCTCGGAT 314894 Query 23608 GTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAG 23667 || |||| | ||| || || || | | || || |||| ||| || || || Sbjct 314895 ACGATGGACGTTAAGACCAATACCACCAGCTGTCTTGGAAATCAGCGCACAAGTCTTGAG 314954 Query 23668 AGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACAT 23727 ||| ||||| ||||| |||||||| || || || | ||| | ||||| |||| ||| Sbjct 314955 AGTATCGTAAATGCCGTCGATGCTATCTTCCTTCATATCGATAAGAAAACAAGAAGCCAT 315014 Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787 ||| | | |||||| | || ||| || || || || || || || || | Sbjct 315015 TTGTGGCTGGGGCGTTCCCGCGTTGAAAAGGGTGGGTGAAGCATGAGTGAAAAATTTCTG 315074 Query 23788 CGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGC 23847 ||||| | ||| || || || ||||| ||||| |||||||| || || || | || Sbjct 315075 GGACATCAAATTATAGGTCTCAATGGCCTTCTCAATATCCTCTCCATGAATTCCAACTGC 315134 Query 23848 GACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 || ||||| ||||||| ||| || | ||| | |||||||||| || | ||| Sbjct 315135 AACACGCATAATCATGTGTTGCGGGCGCTCAGCAACTTTGCCGTTAATTCGGAGTAAATA 315194 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTAT 23967 ||| | | | || || ||||||||||| | |||||||| |||||||| | ||| || Sbjct 315195 TGACCTCTCTAGTGTCTTGAATCCAAAATACTGGTAGTTAAAATCACGATCATACACAAT 315254 Query 23968 GGCCGAATT 23976 |||||| || Sbjct 315255 GGCCGAGTT 315263 >seq2726 Length=527079 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| |||||||| || || || || |||||| | || || || | || || | | ||| Sbjct 136954 TCGTCAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTGGAGTCATCTGATACTATCG 136895 Query 31263 AAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | || || || ||| | ||||||||||||| | || || |||||||| ||| | Sbjct 136894 ACAACGTGAAGACCAAGATTCA-GGACAAGGAAGGCATTCCTCCTGACCAGCAACGTTTG 136836 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || ||||| ||||| ||| | || ||| ||| | ||||||||||||||||| Sbjct 136835 ATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCTGATTATAACATTCAAAAG 136776 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||||||||| || ||| | || | || |||| Sbjct 136775 GAATCTACTCTTCATCTTGTTCTTCGTCTCCGCGGTGGTA 136736 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || ||||| |||||||| || || | || |||||| | ||| Sbjct 136736 ATGCAAATTTTCGTGAAAACCCTGACCGGCAAAACTATTACATTGGAAGTTGAATCCTCC 136677 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| || |||||||| | ||||| || || Sbjct 136676 GACACAATCGACAATGTAAAAACCAAAATTCAAGATAAGGAAGGAATTCCGCCAGATCAA 136617 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTT---GGAAGACTCTATGACTATGAGCGATTAT 31369 || ||| | || || || || || || | ||| | | || ||| | ||||| Sbjct 136616 CAACGTTTGATTTTTGCCGGAAAGCAACTTGAGGATGGCCGTA-CACTCT--CTGATTAC 136560 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| |||||||| || || || ||| | || | || |||| Sbjct 136559 AATATTCAAAAAGAGTCGACTCTGCACCTTGTCCTTCGCTTGCGTGGTGGTA 136508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || || ||||||||||| | || ||||| | || Sbjct 136508 ATGCAGATTTTCGTGAAAACACTCACTGGAAAAACGATCACGCTGGAAGTTGAGTCATCG 136449 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| || | | | ||| || || || || ||||| | || || ||||| Sbjct 136448 GACACAATCGACAATGTTAAGACAAAG-ATTCAAGATAAAGAAGGTATTCCACCAGACCA 136390 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || || || || || ||| | ||||| ||| | ||||||||| Sbjct 136389 GCAACGACTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGGACGCTTTCCGATTATAA 136330 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| |||||| ||||| || |||| | ||| || | || |||| Sbjct 136329 CATTCAGAAAGAAAGCACTCTGCACTTGGTGTTGAGATTGCGTGGTGGTA 136280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445749265854000