Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2473 123 5e-23 seq2550 93.3 8e-14 >seq2473 Length=337605 Score = 123 bits (136), Expect = 5e-23 Identities = 287/429 (67%), Gaps = 23/429 (5%) Strand=Plus/Plus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 ||||||||||||| || || ||||| ||||| || || | ||||| |||||||||||| Sbjct 140172 TTGCCTTTGCTGCTGTCGAGGGAATTTTCTTCAGCGGCTCCTTCGCTTCCATTTTCTGGC 140231 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| | ||| || |||||||||| |||| || || || || || ||| | || | Sbjct 140232 TAAAGAAGCGCGGTCTTATGCCTGGTCTTACCTTTTCGAACGAATTGATCTCTCGTGATG 140291 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTG-TTGAAAAAGGGTTTTGTTGATACCCCA 102097 | |||||||| |||||||| ||| ||||| || | | | | | ||| Sbjct 140292 AGGGTCTTCACACTGACTTTGCCTGCCTGCTGTTTTCTCACATGCATCATCG--GCCCAG 140349 Query 102098 TCAAGAGAAAGGATTCTTGAA---ATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 || || | ||||| ||| |||| || || || |||||| | ||||| Sbjct 140350 TCCCCAGGCCG-----TTGAAGCCATTATCACAGAGGCAGTTGAAATTGAGAAGGAATTC 140404 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | |||| ||| | | | |||||||||| |||| | ||| | || ||| Sbjct 140405 TTGACCGATGCCCTCCCTTGTGCTCTGCTTGGAATGAACTCCAAGCTCATGTGTCAATAC 140464 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAG------AAAAGCACTAT 102268 || || || || || | | | ||| ||| ||| || | ||||| |||| Sbjct 140465 ATCGAGTTCGTTGCCG---ACCGGTTGCTTG---TGGCTCTTGGCAACAAAAAGTTCTAT 140518 Query 102269 AATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTT 102328 |||| || ||||| ||| || ||||||||||| || || | |||||||||||| Sbjct 140519 AATGCCACTAACCCATTCGACTTTATGGACAATATCTCGCTGGCTGGTAAGACCAACTTC 140578 Query 102329 TTTGAAAAG 102337 ||||| ||| Sbjct 140579 TTTGAGAAG 140587 >seq2550 Length=338734 Score = 93.3 bits (102), Expect = 8e-14 Identities = 172/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||| |||||||| || | || ||| |||||||| ||||| || || ||| Sbjct 314917 CCACCAGCTGTCTTGGAAATCAGCGCACAAGTCTTGAGAGTATCGTAAATGCCGTCGATG 314976 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGTTCCACA 94910 ||||| || | | | | ||| || || || | | ||| || || | | ||||| Sbjct 314977 CTATCTTCCTTCATATCGATAAGAAAACAAGAAGCCATTTGTGGCTGGGGC-GTTCCCGC 315035 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 || || || ||||| |||||||| || ||| | | | ||||| | || ||| || || Sbjct 315036 GTTGAAAAGGGTGGGTGAAGCATGAGTGAAAAATTTCTGGGACATCAAATTATAGGTCTC 315095 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030 |||| | | || || ||| ||||| || || || |||||||||||||||| || Sbjct 315096 AATGGCCTTCTCAATATCCTCTCCATGAATTCCAACTGCAACACGCATAATCATGTGTTG 315155 Query 95031 AGGGCGCTCA 95040 ||||||||| Sbjct 315156 CGGGCGCTCA 315165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989545011936625