Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2550 228 1e-54 seq2473 98.7 1e-15 >seq2550 Length=338734 Score = 228 bits (252), Expect = 1e-54 Identities = 570/859 (66%), Gaps = 10/859 (1%) Strand=Plus/Plus Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 ||||||||||| | ||| | ||| || || | | | ||||||||||| || | ||| Sbjct 314593 TCATTCGGACAGAACAAGGTCCAATCACCGTTCTTCTCAACTCGTTTCATGAACAAATCT 314652 Query 72043 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 72102 || |||||||||| | || ||||| | || ||| || || ||||| ||||| Sbjct 314653 GGGGTCCAAAGAGCAAGGAAGAGATCACGGGCTCTCACTTCTTCCTTTCCGTGGTTCTTG 314712 Query 72103 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 72162 |||||| || || | | ||||| |||||||| ||||| | ||| || || | | Sbjct 314713 CGAAGATCCAGAAATTCAAAGATATCGGAATGCCAAGGTTCAAGGTAGATTGCGAAGGCG 314772 Query 72163 CCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 72222 || ||||||||||| || || ||||| | ||||| |||||| || ||| | || | | | Sbjct 314773 CCTGGCCGTTTGTTGCCACCTTGATCAACGTATCGAGCGGTATTGTTAAAGACACGGAGC 314832 Query 72223 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 72282 || || ||||| ||||| || | ||||| || || | |||||| ||| |||| || Sbjct 314833 ATAGGTATAATTCCATTAGAAGAGCCATTTGTGCCTGCAATATAGGAGCCAGTGGCTCGG 314892 Query 72283 ATATTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 72341 ||| | | | | ||||| || || || || | || || || | || || || Sbjct 314893 ATA-CGATGGACGTTAAGACCAATACCACCAGCTGTCTTGGAAATCAGCGCACAAGTCTT 314951 Query 72342 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 72401 | ||||| || ||||| || || ||||| ||| |||| | | |||||||| || Sbjct 314952 GAGAGTATCGTAAATGCCGTCGATGCTATCTTCCTTCATATCGATAAGAAAACAAGAAGC 315011 Query 72402 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 72461 |||||| | | |||||||| || || | ||| || ||||| || || || |||| Sbjct 315012 CATTTGTGGCTGGGGCGTTCCCGCGTTGAAAAGGGTGGGTGAAGCATGAGTGAAAAATTT 315071 Query 72462 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTAC 72521 | |||| | ||| || |||||||| || || |||||| | ||| ||||| || Sbjct 315072 CTGGGACATCAAATTATAGGTCTCAATGGCCTTCTCAATATCCTCTCCATGAATTCCAAC 315131 Query 72522 CGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 72581 || |||||||| | ||| || || || | ||| | | ||| || ||| | || Sbjct 315132 TGCAACACGCATAATCATGTGTTGCGGGCGCTCAGCAACTTTGCCGTTAATTCGGAGTAA 315191 Query 72582 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 72641 || || | || | || || || |||||||| | ||| ||| || || || || | Sbjct 315192 ATATGACCTCTCTAGTGTCTTGAATCCAAAATACTGGTAGTTAAAATCACGATCATACAC 315251 Query 72642 AATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAAT 72701 ||| |||| || |||| || || ||| |||| || || ||| | ||||| Sbjct 315252 AATGGCCGAGTTAAGTTCCTCAGCATGTTTCATAACAATTTCATAGGTTTTGTGAGAAAT 315311 Query 72702 AAT---CGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCAC 72758 || || || | | || ||||| || || ||| | | | | || || || || Sbjct 315312 CATGGGCGCAGGACGGTT---GTTTTTTGGGTTGGTATAATGGTAAAGGTCGTCAATAAC 315368 Query 72759 TTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTA 72817 || | ||| | || || || | || || || || ||||||||||||||||| || | Sbjct 315369 -GGACGAGAATTGCTTCTTCGTCTGTTTATGCAGGTTCGATACGGCTATTCTGGCAGCAA 315427 Query 72818 GAATGGCATAATCTGGATG 72836 |||| || ||||| ||||| Sbjct 315428 GAATCGCGTAATCAGGATG 315446 Score = 104 bits (114), Expect = 3e-17 Identities = 207/306 (68%), Gaps = 3/306 (1%) Strand=Plus/Plus Query 70785 TTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTA 70844 || ||||| || | || |||||||| || | || || || ||||||| |||||||| Sbjct 313332 TTGTTCCTGATCGACGGTGAACTGAATTGGCGCAGAAGCTGCCATCGTACGGAGATAGTA 313391 Query 70845 CATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATA 70904 ||||||||| || | ||| || ||||||| ||| ||||| || || | |||| Sbjct 313392 CATGCCTGTCTTCAAACCAAGCTTCCATCCCGCAAAGTGCATGCTAGTGATTTTGCCCAT 313451 Query 70905 GCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTC 70964 | |||| || | |||||| || | || || || || ||||| || |||| || Sbjct 313452 GGTAGGTTCCTTGAGGTGAATGTTGAGAGATTGGGACTGGTCAATGAATGCACCCCGATC 313511 Query 70965 TGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 71024 ||||||| || || || || |||||| || ||||| | || || || | || Sbjct 313512 GGCAGCCAGTTGAATAATGGTTCTTTGTGAGATCTCCCATACTGTCTTGTAGAGAGCTTT 313571 Query 71025 AATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATT 71081 ||||||| | || | ||||| | ||||| | || ||||| || || || || | || Sbjct 313572 AATATCTGCAGGGATGTTTGGAATGTTCTGGACCGAGCCACCTTCAGCGATGATACGGTT 313631 Query 71082 TTTGAT 71087 ||| || Sbjct 313632 TTTCAT 313637 >seq2473 Length=337605 Score = 98.7 bits (108), Expect = 1e-15 Identities = 296/455 (65%), Gaps = 4/455 (1%) Strand=Plus/Minus Query 41758 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCC 41817 || |||||| || || ||||| ||||| ||||| || || || || || ||||| || Sbjct 140623 AGCCATAACACCAGCCTTCTGGTAATCACCAACACGCTTCTCAAAGAAGTTGGTCTTACC 140564 Query 41818 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 41877 ||| || ||||| ||||| || || || || || || ||||||| | ||||| Sbjct 140563 AGCCAGCGAGATATTGTCCATAAAGTCGAATGGGTTAGTGGCATTATAGAACTTTTTGTT 140504 Query 41878 TCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACA 41937 || | | || ||| | || || | ||| || || ||| ||| | | | Sbjct 140503 GCCAAGAGCCACAAGCAACCGGTCGGCAACGAACTCGATGTATTGACACATGAGCTTGGA 140444 Query 41938 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 41997 |||||||| | || | || || || | || | ||||| | ||||| || Sbjct 140443 GTTCATTCCAAGCAGAGCACAAGGGAGGGCATCGGTCAAGAATTCCTTCTCAATTTCAAC 140384 Query 41998 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTT--A 42055 || ||||| ||||| | | || | | ||| || ||| || |||| | Sbjct 140383 TGCCTCTGTGATAATGGCTTCAACGGCCTGGGGACTGGGCCGATG--ATGCATGTGAGAA 140326 Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || || || || || ||| ||||||||||| | | || |||||||| ||| Sbjct 140325 AACAGCAGGCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATCAATTCGTTCGAA 140266 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || ||||| || || ||||| || ||||| || || || || || || || Sbjct 140265 AAGGTAAGACCAGGCATAAGACCGCGCTTCTTTAGCCAGAAAATGGAAGCGAAGGAGCCG 140206 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAAT 42210 ||||| ||||| || || || ||||||||||| Sbjct 140205 CTGAAGAAAATTCCCTCGACAGCAGCAAAGGCAAT 140171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671113403087000