Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2473 154 2e-32 seq2550 84.2 3e-11 >seq2473 Length=337605 Score = 154 bits (170), Expect = 2e-32 Identities = 213/290 (73%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| ||||||||||||| || | || ||||| ||||| | ||||| ||||| || Sbjct 139697 ATTTGGCAAATGTACAAAAAAGCCGAAGCATCCTTCTGGACTGCTGAAGAAATCGATTTG 139756 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||| || || | || ||| | ||| ||| || ||| || | || || || Sbjct 139757 TCCAAAGATCTCCATGACTGGAACCATCGACTGAACGACGATGAACGCTACTTCATCTCT 139816 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 | | | |||||||||| |||| ||||||||| |||||||| || |||| ||| || | | Sbjct 139817 CGCGTCCTGGCCTTCTTCGCCGCCTCCGATGGCATCGTCAATGAGAATCTTGTCGAGA-G 139875 Query 125198 ATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 |||| | | |||| | |||||||||| ||| ||||||||||||||||| |||||| Sbjct 139876 ATTCAGCGCTGAAGTTCA-GATTCCAGAGG-CTCGTTGCTTTTACGGATTCCAGATCATG 139933 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || ||||| | || || || | |||||| || ||||||| |||||| Sbjct 139934 ATGGAGAATATCCATTCCGAGACATACTCTCTCCTCATTGACACGTACAT 139983 Score = 91.5 bits (100), Expect = 2e-13 Identities = 326/504 (65%), Gaps = 27/504 (5%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || ||||| |||||| | |||| ||||| |||||| | || | | || | | |||| Sbjct 140102 ATTCGTAAGAAGGCTGACTGGGCCATTCGATGGATCCAGGATCAGGAATCGACATTCGCC 140161 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | || | || || || || || ||||| || ||||| || || || || Sbjct 140162 CAGCGCTTGATTGCCTTTGCTGCTGTCGAGGGAATTTTCTTCAGCGGCTCCTTCGCTTCC 140221 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 || || ||||| ||||||||||| || ||||| || || || ||||| || || Sbjct 140222 ATTTTCTGGCTAAAGAAGCGCGGTCTTATGCCTGGTCTTACCTTTTCGAACGAATTGATC 140281 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT---TCGCAACTATCTG 125597 ||||| || ||||| || ||| |||||||||| || ||||| || || ||| Sbjct 140282 TCTCGTGATGAGGGTCTTCACACTGACTTTGCCTGCCTGCTGTTTTCTCACATGCATCAT 140341 Query 125598 CGTCCCGAGTGCAGATCCAG--CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGA 125655 || ||| ||| | |||| || |||| |||| | || || || || Sbjct 140342 CGGCCC-AGTCC----CCAGGCCGTTGAA---------GCCATTATCACAGAGGCAGTTG 140387 Query 125656 GGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGC 125714 || || | || || | ||||| |||| || | || || |||| ||||||| | Sbjct 140388 AAATTGAGAAGGAATTCTTGACCGATGCCCT-CCCTTGTGCTCTGCTTGGAATGAACTCC 140446 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC 125774 ||||| ||||| | ||||| ||||| || || || || | || | | ||||| Sbjct 140447 AAGCTCATGTGTCAATACATCGAGTTCGTTGCCGACCGGTTGCT---TGTGGCTCTTGGC 140503 Query 125775 CGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 | ||| | || || |||| || || || || || ||| || || || || | Sbjct 140504 AACAAAAAGTTCTATAATGCCACTAACCCATTCGACTTTATGGACAATATCTCGCTGGCT 140563 Query 125832 GGTAAGACCAACTTTTTCGAGAAG 125855 |||||||||||||| || |||||| Sbjct 140564 GGTAAGACCAACTTCTTTGAGAAG 140587 >seq2550 Length=338734 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 ||||||||| || || ||||| |||||||||||||| | || ||||| | |||||| Sbjct 314807 CGATACGTTGATCAAGGTGGCAACAAACGGCCAGGCGCCTTCGCAATCTACCTTGAACCT 314748 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 ||||| | || | ||||| ||| | || | ||||| ||| || ||||| | Sbjct 314747 TGGCATTCCGATATCTTTGAATTTCTGGATCTTCGCAAGAACCACGGAAAGGAAGAAGTG 314688 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT 97039 ||||| | || | || ||| || ||| ||||||||||||||||| || || Sbjct 314687 AGAGCCCGTGATCTCTTCCTTGCTCTTTGGACCCCAGATTTGTTCATGAAACGAGT 314632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741030715537000