Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2726 149 6e-31 seq2257 84.2 2e-11 >seq2726 Length=527079 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||||| |||||||||||||| ||| ||| || || | |||||||||| Sbjct 136282 CCACCACGCAATCTCAACACCAAGTGCAGAGTGCTTTCTTTCTGAATGTTATAATCGGAA 136341 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || ||||| |||||| ||||||| | || |||||| ||||| ||| Sbjct 136342 AGCGTCCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGTCGTTGCTGGTCTGGTGGA 136401 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||||||||| || | ||| |||| ||| || | ||| ||||| | || || Sbjct 136402 ATACCTTCTTTATCTTGAATCTTTGTCTTAACATTGTCGATTGTGTCCGATGACTCAACT 136461 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||| ||||||||||| || |||||||| || |||||||| Sbjct 136462 TCCAGCGTGATCGTTTTTCCAGTGAGTGTTTTCACGAAAATCTGCAT 136508 Score = 116 bits (128), Expect = 3e-21 Identities = 144/196 (73%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||||||||||||||| | ||||||||| | |||| | ||||| | Sbjct 136757 CAAGATGAAGAGTAGATTCCTTTTGAATGTTATAATCAGAGAGAGTGCGGCCGTCCTCGA 136816 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || ||| | || || || | |||||| || |||||||| ||||| ||||| | || Sbjct 136817 GCTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAA 136876 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || | ||| ||| | ||| ||| |||| || || |||| |||||||| |||| Sbjct 136877 TCTTGGTCTTCACGTTGTCGATAGTATCAGATGACTCCACCTCAAGGGTGATGGTCTTTC 136936 Query 94980 CAGTAAGAGTTTTCAC 94995 | |||||||| || || Sbjct 136937 CGGTAAGAGTCTTGAC 136952 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||| ||||| || | ||| || || | || ||| || ||| | Sbjct 137057 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAG--AAAGGGTTCGACCATCTT 137114 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | |||||||| || ||||||| || | |||||| || ||||| || || || ||||| | Sbjct 137115 CAAGCTGTTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGAGGGATGCCCTCCTTGTCTT 137174 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || | |||||| | | ||||||| || || || | |||||||| | Sbjct 137175 GGATCTTGGTCTTGACATTATCAATAGTGTCACTAGACTCCACCTCGAGGGTGATGGTCT 137234 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| || || || || || |||||||||||| Sbjct 137235 TTCCCGTCAGGGTCTTGACGAAGATCTGCATG 137266 >seq2257 Length=132105 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 ||||||| | ||||||||||||| ||| | || || ||||| |||||| | |||| Sbjct 93799 CCTTTTGGATATTATAATCGCTCAAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGA 93740 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | |||| |||||||||||| || || || || ||||| | ||| || ||| || | Sbjct 93739 TCAATCGTTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGAATCTTGCTCTTCACATTGT 93680 Query 94938 CGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| ||||| || | || || |||| ||||| || || || || || || || || Sbjct 93679 CGATTGTGTC-GCTCGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGCGTCTTGACG 93621 Query 94997 AAG 94999 ||| Sbjct 93620 AAG 93618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448273968807000