Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1639 104 4e-18 seq2264 93.3 7e-15 >seq1639 Length=831451 Score = 104 bits (114), Expect = 4e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| |||| |||||| || ||||| |||||||| || ||||| ||||| Sbjct 624450 GCCAAGCGTCATCGAAAGAT-TCTTCGTGACAACATTCAAGGAATTACAAAGCCTGCTAT 624508 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| || ||||||||||| ||||||||| |||| Sbjct 624509 CCGCCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTC 624547 >seq2264 Length=350467 Score = 93.3 bits (102), Expect = 7e-15 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 16541 TATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600 ||||| || | ||| |||| | ||| |||||| | | || || | |||||| || Sbjct 24118 TATGAGGAAACCCGTACTGTTCTAAAGTCATTCCTCGAATCTGTCATTCGTGATGCCGTC 24177 Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660 || |||||||||||||| |||||||| ||||| || | ||| | |||||||| ||| Sbjct 24178 ACATACACCGAGCACGCTAAGCGTAAGACCGTCACTTCGCTCGATGTTGTCTATGCCTTG 24237 Query 16661 AAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || || || ||||||| | || |||||||| ||||| Sbjct 24238 AAGCGACAGGGCCGTACCTTGTACGGTTTTGGCGGTTAA 24276 Score = 86.0 bits (94), Expect = 1e-12 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||||| | || || ||||| || || ||||||||||| || || Sbjct 23930 GCCAAGCGCCACCGAAAGATCT-TACGTGACAACATTCAGGGTATCACCAAGCCTGCCAT 23988 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||||||| || ||||||||||| ||||||||| |||| Sbjct 23989 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTC 24027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072388505975