Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2726 131 4e-25 seq2257 109 1e-18 >seq2726 Length=527079 Score = 131 bits (144), Expect = 4e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| || ||||||| || ||| ||||| || ||||| || | | Sbjct 136738 CCACCGCGGAGACGAAGAACAAGATGAAGAGTAGATTCCTTTTGAATGTTATAATCAGAG 136797 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||| |||| ||| || || | || Sbjct 136798 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGA 136857 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || || | |||||||| || |||| ||| || || || Sbjct 136858 ATGCCTTCCTTGTCCTGAATCTTGGTCTTCACGTTGTCGATAGTATCAGATGACTCCACC 136917 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 || || ||||| ||||| ||||| ||||||||||||| || Sbjct 136918 TCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTGACGACTA 136957 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||||||||| || || ||||| |||| ||||| || || ||||| | || ||||| Sbjct 136312 GTGCTTTCTTTCTGAATGTTATAATCGGAAAGCGTCCGGCCATCTTCAAGCTGCTTTCCG 136371 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 || ||||| || || || || ||| || ||||||||||| || || || | || Sbjct 136372 GCAAAGATAAGTCGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTTGTCTTA 136431 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || || | || || || ||||| ||||||||||| || || || || || Sbjct 136432 ACATTGTCGATTGTGTCCGATGACTCAACTTCCAGCGTGATCGTTTTTCCAGTGAGTGTT 136491 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 136492 TTCACGAAAATCTGCAT 136508 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | |||| || || || || || || ||||| | Sbjct 137039 CCGCCACGGAGGCGAAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAA 137098 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||||| || || ||||||| || || || | ||| Sbjct 137099 AGGGTTCGACCATCTTCAAGCTGTTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGAGGG 137158 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| || | || || || || |||| || || || || || Sbjct 137159 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTATCAATAGTGTCACTAGACTCCACC 137218 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 137219 TCGAGGGTGATGGTCTTTCCCGTCAGGGTCTTGACGAAGATCTGCAT 137265 >seq2257 Length=132105 Score = 109 bits (120), Expect = 1e-18 Identities = 143/193 (74%), Gaps = 10/193 (5%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||||||||| ||| | || || |||||||| | || ||||| ||||||||| Sbjct 93797 TTTTGGATATTATAATCGCTCAAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATC 93738 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 | || || ||| |||||| || || || || || || || || ||| ||||| || Sbjct 93737 AATCGTTGCTGA---TCTGGGGGGATGCCCTCCTTGTCTTGAATCTT-GCTCTTCACATT 93682 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | |||||||| || || || || ||||| ||||| ||||| || |||||||| Sbjct 93681 GTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGCGTCTTGAC 93622 Query 288462 GAA--TATCTGCA 288472 ||| ||| |||| Sbjct 93621 GAAGCTATTTGCA 93609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179607923459850