Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2550 176 6e-39 seq573 93.3 5e-14 seq2473 86.0 8e-12 >seq2550 Length=338734 Score = 176 bits (194), Expect = 6e-39 Identities = 416/626 (66%), Gaps = 7/626 (1%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| || ||||| | ||||| || || | || || ||||| || |||||||| | Sbjct 315159 CCCGCAACACATGATTATGCGTGTTGCAGTTGGAATTCATGGAGAGGATATTGAGAAGGC 315100 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| || | |||||||| | |||| || || |||| ||||| || Sbjct 315099 CATTGAGACCTATAATTTGATGTCCCAGAAATTTTTCACTCATGCTTCACCCACCCTTTT 315040 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || || |||||| | |||||| ||||| | | ||||| || Sbjct 315039 CAACGCGGGAACGCCCCAGCCACAAATGGCTTCTTGTTTTCTTATCGATATGAAGGAAGA 314980 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 | ||| | |||||||||| ||||||| ||||| | || || ||| ||||| Sbjct 314979 TAGCATCGACGGCATTTACGATACTCTCAAGACTTGTGCGCTGATTTCCAAGACAGCTGG 314920 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 |||||| || | || ||||| | || |||||| || |||| ||| ||||| Sbjct 314919 TGGTATTGGTCTTAACGTCCATCGTATCCGAGCCACTGGCTCCTATATTGCAGGCACAAA 314860 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 ||| || |||| ||||| || ||||| || || |||||| || || || || || Sbjct 314859 TGGCTCTTCTAATGGAATTATACCTATGCTCCGTGTCTTTAACAATACCGCTCGATACGT 314800 Query 111971 AAACCAAGCTGGGCGTC-----GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 | |||| | ||| | || ||| || ||||| |||| ||||| || ||||| Sbjct 314799 TGATCAAGGT-GGCAACAAACGGCCAGGCGCCT-TCGCAATCTACCTTGAACCTTGGCAT 314742 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 | |||||| | || || || || | || ||||| || | || || | | | | Sbjct 314741 TCCGATATCTTTGAATTTCTGGATCTTCGCAAGAACCACGGAAAGGAAGAAGTGAGAGCC 314682 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || ||||||||| ||||| |||| |||||| | |||||||| |||||||| ||| Sbjct 314681 CGTGATCTCTTCCTTGCTCTTTGGACCCCAGATTTGTTCATGAAACGAGTTGAGAAGAAC 314622 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 || ||||| | | || ||||| | |||| || || | | |||| | ||||| Sbjct 314621 GGTGATTGGACCTTGTTCTGTCCGAATGAGGCGCCAGGGTTGGCTGATGTCTATGGTGAC 314562 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTA 112231 |||||||| || ||||| |||||| Sbjct 314561 GAGTTTGAGGCTCTCTATGAAAAGTA 314536 >seq573 Length=143031 Score = 93.3 bits (102), Expect = 5e-14 Identities = 229/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 176732 AGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATAC 176791 ||||| ||||| ||| |||||| | ||| ||| ||||||||||| ||| | ||||| Sbjct 55335 AGACCTTTGATATGGCTACCGTCATGATCTTGATCAGTCATGATCATAAGATGGCCATAG 55276 Query 176792 CGAAG--CTCG-GAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTG 176848 ||||| |||| | | | || || ||||| || || |||||||||| || ||| Sbjct 55275 CGAAGCCCTCGCGTGTC--CGTG-TATTCCTTTTTGTGCTGCAGACCCAAGAAATTTTTG 55219 Query 176849 AGATCGTTGAA-CTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTT 176907 | || ||||| |||||| || | || ||| ||||| || || || ||||| Sbjct 55218 ATAT-TTTGAATCTCTTGATTCTTGGAGATCTGGTCAACAGATGCGTCGCGGACATTGAG 55160 Query 176908 ACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGC 176967 ||| || ||||| |||||||| || || ||||| ||||| |||| || || Sbjct 55159 TAGCTTTCCTCGAAGGGGGAAGACGCCAAAGAGATCGGCGCCAACAACAGCTCTTCCAGC 55100 Query 176968 AACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGATTG 177027 | || || || |||||||| || || || | ||||||||||| | | || Sbjct 55099 CATTGCAAGACCCTTGGCAGAATCTCCTTCGGTGAGAATGAGTGTACAGTGGTGGCCTTC 55040 Query 177028 TGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATA 177067 | || || || ||||| ||||| |||||| ||| || Sbjct 55039 TTTGGTTCCTGCTTTGTTGGCATCCGTCAATTTTGGATTA 55000 >seq2473 Length=337605 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || ||||| ||| ||||| || |||||| || |||||| | |||| ||||| Sbjct 140174 GCCTTTGCTGCTGTCGAGGGAATTTTCTTCAGCGGCTCCTTCGCTTCCATTTTCTGGCTA 140233 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 |||||||| ||||| ||||| ||||| ||| || ||||| | ||||||||||| ||| Sbjct 140234 AAGAAGCGCGGTCTTATGCCTGGTCTTACCTTTTCGAACGAATTGATCTCTCGTGATGAG 140293 Query 102312 GGACTCCACCAAGAGTTTGC 102331 || || ||| || ||||| Sbjct 140294 GGTCTTCACACTGACTTTGC 140313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620718540214000