Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2550 105 8e-18 >seq2550 Length=338734 Score = 105 bits (116), Expect = 8e-18 Identities = 448/710 (63%), Gaps = 9/710 (1%) Strand=Plus/Plus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || || || |||| |||||| | |||| | || || | ||| ||||| || ||| Sbjct 313342 TCGACGGTGAACTGAATTGGCGCAGAAGCTGCCATCGTACGGAGATAGTACATGCCTGTC 313401 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || ||||| | ||||||| || ||||| ||||| | ||| ||||||| Sbjct 313402 TTCAAACCAAGCTTCCATCCCGCAAAGTGCATGCTAGTGATTTTGCCCATGGTAGGTTCC 313461 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | ||||| || |||||||| ||| ||||| |||||||| | ||| || |||| Sbjct 313462 TTGAGGTGAATGTTGAGAGATTGGGACTGGTCAATGAATGCACCCCGATCGGCAGCCAGT 313521 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCT 47216 | | ||| ||||||| |||||||||||||| || || | |||||| ||| | Sbjct 313522 TGAATAATGGTTCTTTGTGAGATCTCCCATACTGTCTTGTAGAGAGCTTTAATATCTGCA 313581 Query 47217 GGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataattttgttttttaattca 47273 |||| || | | || || | || || || | | || || |||||| | | Sbjct 313582 GGGATGTTTGGAATGTTCTGGACCGAGCCACCTTCAGCGATGATACGGTTTTTCATGTTG 313641 Query 47274 tttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAAT 47333 | ||||||||| | || | || | ||| ||||| |||| || ||| Sbjct 313642 TCTGACCAAAGGCCGAGATCCACGAGATCCTTCAGAAGCCACGGATTGACAACCTGGAAT 313701 Query 47334 TCTCCAGATAGTACTCTACGGCTA---TATATATTACTTGTATATGGTTCTATAGATTCA 47390 || || | || ||| || ||| || || || ||| |||||||| | | |||| Sbjct 313702 TCACCTGCAAGAACT---CGTCTAGAGTAAATGTTTGATGTGTATGGTTCAAAACATTCG 313758 Query 47391 TTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTT 47450 ||| ||| | ||| ||| || ||||| ||||| | || || | |||||||| Sbjct 313759 TTAAATCCGAGAATCTGACTTGTGCTGGCTGTTGGCATAGGAGCGACAAGCAAGCTATTA 313818 Query 47451 CTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGA 47510 | || |||| |||| || | | ||||||||||||||| | || Sbjct 313819 CGCACACCATGTTTTGCAATATCTGTTTTGAGCAAATCCCAATCCCAAAGATCAGTAGGC 313878 Query 47511 ACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTT 47570 || ||||| | ||||||||| | || || ||| | ||||| || | ||| || Sbjct 313879 GTCACGTTCCACATATCATATTGCAAAACGCCCTTAGAAACGGGAGAGCCTTCATAGGTC 313938 Query 47571 TTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATT 47630 | ||| ||||||| | ||| || || || || || ||| || | ||| || Sbjct 313939 TCATAGGGACCGTCAACTTTGGCTAGGTCGCAGGACGCGGTCAAAGCGGCGTGATAAATG 313998 Query 47631 GTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGG 47680 ||||| ||||| | || || || | | |||| |||| || || || || Sbjct 313999 GTTTCGAATATCTGGATATTCAGCTGCTTTGCCTCTGGGGAATCGAACGG 314048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562087193943000