Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2726 123 4e-23 seq2473 84.2 3e-11 >seq2726 Length=527079 Score = 123 bits (136), Expect = 4e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||| || |||||||||||||| ||||| ||| || Sbjct 136736 ATGCAAATTTTCGTGAAAACCCTGACCGGCAAAACTATTACATTGGAAGTTGAATCCTCC 136677 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || |||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 136676 GACACAATCGACAATGTAAAAACCAAAATTCAAGATAAGGAAGGAATTCCGCCAGATCAA 136617 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| |||||| ||||| || || ||| | | || | || ||||| ||| Sbjct 136616 CAACGTTTGATTTTTGCCGGAAAGCAACTTGAGGATGGCCGTACACTCTCTGATTACAAT 136557 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| |||| || || Sbjct 136556 ATTCAAAAAGAGTCGACTCTGCA 136534 Score = 96.9 bits (106), Expect = 5e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | |||||| | ||||||||||| || || | ||||| || || Sbjct 136508 ATGCAGATTTTCGTGAAAACACTCACTGGAAAAACGATCACGCTGGAAGTTGAGTCATCG 136449 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || | || || |||||||||||||| || || ||||| || Sbjct 136448 GACACAATCGACAATGTTAAGACAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAG 136389 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| || | || | |||||| |||||||| |||||| | | || | || |||||||| Sbjct 136388 CAACGACTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGGACGCTTTCCGATTATAAC 136329 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || ||||| || || || || ||||| ||||| Sbjct 136328 ATTCAGAAAGAAAGCACTCTGCACTTGGTGTTGAGATT 136291 Score = 86.0 bits (94), Expect = 9e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 155847 ACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAAT 155906 || ||||| || || || | || || || ||||||| ||| |||||||| | Sbjct 136940 ACCGGAAAGACCATCACCCTTGAGGTGGAGTCATCTGATACTATCGACAACGTGAAGACC 136881 Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 || || || || || |||||||| ||||| || || ||| | ||||||| ||||| ||| Sbjct 136880 AAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAGCAACGTTTGATTTTCGCCGGCAAG 136821 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCA 156025 |||||||| || | | ||| | || |||||||| || || ||| || | || ||||| Sbjct 136820 CAGCTCGAGGACGGCCGCACTCTCTCTGATTATAACAT-TCAAAAGGAATCTACTCTTCA 136762 Query 156026 T 156026 | Sbjct 136761 T 136761 >seq2473 Length=337605 Score = 84.2 bits (92), Expect = 3e-11 Identities = 200/298 (67%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 || |||||| || || || || ||||| || | | ||| || | || ||||| || Sbjct 139999 TTGCTTTGGT-TCCTTGATGTACGTGTCAATGAGGAGAGAGTATGTCTCGGAATGGATAT 139941 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTC-GCTA 18529 | ||||| ||||| || | ||||| | | |||||| ||| |||| || || Sbjct 139940 TCTCCATCATGATCTGGAATCCGTAAAAGCAACGAGCCTCTGGAATCTGAACTTCAGCGC 139881 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 | || ||| || || | ||||||||| || || || || | | ||||| || |||| Sbjct 139880 TGAA-TCTCTCGACAAGATTCTCATTGACGATGCCATCGGAGGCGGCGAAGAAGGCCAGG 139822 Query 18590 ACATATTTAATGAAATGTTTTTCATTATCCTTGAG---ATTGTTCCATTCATCTATATCT 18646 || ||||| | ||||| || || || || |||||| |||| | |||| Sbjct 139821 ACGCGAGAGATGAAGTAGCGTTCATCGTCGTTCAGTCGATGGTTCCAGTCATGGAGATCT 139762 Query 18647 TTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 || || | ||| | |||||| | ||||| || |||| |||||| | ||||||||||| Sbjct 139761 TTGGACAAATCGATTTCTTCAGCAGTCCAGAAGGATGCTTCGGCTTTTTTGTACATTT 139704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731843868670000