Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq426 217 1e-50 seq2510 93.3 3e-13 seq480 86.0 5e-11 >seq426 Length=421947 Score = 217 bits (240), Expect = 1e-50 Identities = 679/1039 (65%), Gaps = 13/1039 (1%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | |||||| |||||||| || ||||| || || | | || || Sbjct 180560 ATACCGTTGGCATCAAGATCAAAAGTGACTTCGATCTGAGGAACACCACGAGGGGCGGGA 180501 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || || | | ||| | || || || ||||| || || |||||| Sbjct 180500 GGAATTCCAGTAAGTTCGAATTTACCGAGCAAGTTGTTATCCTTGGTACGAGCACGTTCA 180441 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||| | | |||||| ||| ||| || || || || | || | || | | Sbjct 180440 CCCTCGTACACTTGGATCAAAACACCAGGCTGGTTGTCAGAGAAGGTGGAGAAGGTTTCG 180381 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || ||||| | | |||| | ||||| | ||| ||||| Sbjct 180380 GACTTCTTGGTTGGGATAGTGGTGTTGCGCTTGATAAGAGGAGTCATGACACCTCCAGCA 180321 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 ||||| | ||| | ||||||||| | ||||| | |||| || | || | || || Sbjct 180320 GTTTCGATACCCAAAGAAAGAGGGGCAACATCGAGAAGGAGGATTTCATTAGTAGACTTG 180261 Query 281739 CATCAGTT-TGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 | || | | |||| |||||| |||| || || | ||| || ||||| || ||||| || Sbjct 180260 GAAGAGGTGTCACCAGACAAGA-TAGCCGCCTGGACAGCGGCGCCATAGGCGACAGCCTC 180202 Query 281797 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT 281856 ||| || || | | || || ||| || |||||||| |||| |||| | | ||| Sbjct 180201 ATCGGGGTTGATGGATTTGTTGGGTTCCTTGCCATTGAAGAAATCGGAAACCATCT-TCT 180143 Query 281857 T-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 281915 | |||||| ||||| | || || ||||| || || ||||| || || ||||||| Sbjct 180142 GGATCTTAGGGATACGGGTAGAACCACCAACCAAGACGATTTCGTGGACGGAGGATTTAT 180083 Query 281916 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTG 281975 | | || | ||| | || ||||| || || | | | || | ||| Sbjct 180082 CAATCTTGGCATCACGGAGGACACGCTCAACAGGCTCCATGGTGGAGCGGAAGAGGTCCT 180023 Query 281976 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTTCGAAC 282034 ||||| |||||||| ||| | || | || | || || || || || ||||| Sbjct 180022 GGCAAAGCTCTTCGAAACGAGCACGGGTGATAGA-AGTGTAGAAGTCGATACCCTCGAAG 179964 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 | |||||||| |||||| | ||| || | | |||||| || | || || ||||| || Sbjct 179963 AGAGAATCAATTTCAATGGAAGTCTGGGCGGCAGAAGAAAGAGTGCGCTTGGCACGCTCG 179904 Query 282095 CATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA--TCTGTTTTATATT 282152 || || || | || | || | || | ||||| | | || | || | | Sbjct 179903 CAGGCAGTGCGAAGACGACGGAGAGCACGAG--GATTGGAGGAGAGATCCTTCTTGTGCT 179846 Query 282153 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 282212 | | ||||| || | ||| | | ||||| || || |||||||| |||||||||| Sbjct 179845 TGCGTTTGAATTCGTTGACAAAGTGGTTGACAAGGCGGTTGTCAAAATCCTCACCTCCCA 179786 Query 282213 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 282272 | | || | || | |||| | | |||| ||| | || ||||||| || ||| || | Sbjct 179785 AGTGGGTGTCACCGGCAGTAGATTTAACTTCGAAGATGCCCTCTTCAATAGTCAAGAGGG 179726 Query 282273 TAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 282332 |||||| ||| |||||||||| ||| ||||| | || || || ||| || | Sbjct 179725 ACACATCAAAGGTACCACCACCCAAATCGAAAATCAAAACGTTGCGCTCACCGTCATGCT 179666 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 | || || | || || |||| || |||||||| || || || ||||| | | || | Sbjct 179665 TCTTGTCCAAGCCGTAAGCAATGGCGGCAGCAGTGGGCTCGTTGATAATACGGAGGACGT 179606 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 ||||||| ||||| || ||||| || || ||||| | ||| || ||||| || || | Sbjct 179605 TAAGACCGGCAATAAGACCGGCATCCTTGGTAGCTTGACGTTGAGAGTCGTTGAAGTAGG 179546 Query 282453 CAGGAACAGTAATAACGGC 282471 |||||||||||| |||||| Sbjct 179545 CAGGAACAGTAACAACGGC 179527 >seq2510 Length=136142 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| ||||| || | |||||||||||||||||| |||| |||| ||| | || || Sbjct 4246 GAATTCTTCTTTCATGCCATGGCTGGTCGTGAAGGTCTTATCGATACTGCTGTCAAGACC 4187 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 ||||| || ||||| || ||| |||| ||||| ||| || ||||| | | || Sbjct 4186 GCTGAAACCGGTTACATCCAACGAAAGCTTGTGAAGGCCCTAGAAGAAGTGATGGTCAAA 4127 Query 435253 TATGATGGTACAGTGAGAAAT 435273 ||||||||||| ||| | ||| Sbjct 4126 TATGATGGTACTGTGCGCAAT 4106 >seq480 Length=190759 Score = 86.0 bits (94), Expect = 5e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 282721 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 282780 ||||| || || |||||||||| ||| |||| |||||||| | || ||||| || Sbjct 35891 TTGATTCTTTGCAGCATCTCCAACAAGACGTTCCTCATCTGTAAAGGCCACGTATGAAGG 35950 Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840 ||| | || ||||| ||||| || | | |||||||||||| ||||||||| || || Sbjct 35951 AGTGATACGGTTACCCTGATCGTTTACCAAAATTTCAACTTTTCCATTTTGCATCACTCC 36010 Query 282841 TACACAACTA 282850 ||||| ||| Sbjct 36011 GACACAGCTA 36020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740479430494950