Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2726 161 2e-34 seq2257 98.7 2e-15 >seq2726 Length=527079 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| || || || | ||||||||| || ||||| || ||||| ||||||| Sbjct 136508 TACCACCACGCAAGCGAAGGACAAGGTGCAGAGTCGACTCTTTTTGAATATTGTAATCAG 136567 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || ||||| ||||| ||||| || | | |||||||||||| | Sbjct 136568 AGAGTGTACGGCCATCCTCAAGTTGCTTTCCGGCAAAAATCAAACGTTGTTGATCTGGCG 136627 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||| || | ||||||||| || || || || | ||| | Sbjct 136628 GAATTCCTTCCTTATCTTGAATTTTGGTTTTTACATTGTCGATTGTGTCGGAGGATTCAA 136687 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || ||||| |||| || || || || || ||||| Sbjct 136688 CTTCCAATGTAATAGTTTTGCCGGTCAGGGTTTTCACGAAAATTTGCAT 136736 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| ||||| || ||||| || ||||| || || || ||||| || ||| ||| Sbjct 137051 CGAAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGACCA 137110 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || ||||| ||||||||||| | | ||| || || ||||| || || ||||| Sbjct 137111 TCTTCAAGCTGTTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGAGGGATGCCCTCCTTG 137170 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| | || ||||| ||||| || ||| ||| || || || | || || Sbjct 137171 TCTTGGATCTTGGTCTTGACATTATCAATAGTGTCACTAGACTCCACCTCGAGGGTGATG 137230 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||| ||||| || || |||||||| Sbjct 137231 GTCTTTCCCGTCAGGGTCTTGACGAAGATCTGCAT 137265 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| | || || ||||||||||| ||||||||| || |||||||| | Sbjct 136280 TACCACCACGCAATCTCAACACCAAGTGCAGAGTGCTTTCTTTCTGAATGTTATAATCGG 136339 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || ||||| |||||||| |||| ||| || ||||| | Sbjct 136340 AAAGCGTCCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGTCGTTGCTGGTCTGGTG 136399 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||||||||||| || ||||| || || || || | || | Sbjct 136400 GAATACCTTCTTTATCTTGAATCTTTGTCTTAACATTGTCGATTGTGTCCGATGACTCAA 136459 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || ||||| || || || | || || || || |||||||| Sbjct 136460 CTTCCAGCGTGATCGTTTTTCCAGTGAGTGTTTTCACGAAAATCTGCAT 136508 Score = 104 bits (114), Expect = 5e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| | || ||||||||||| || || || |||||||||| Sbjct 136736 TACCACCGCGGAGACGAAGAACAAGATGAAGAGTAGATTCCTTTTGAATGTTATAATCAG 136795 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||||| || || || || || || || || | | ||| || || |||| Sbjct 136796 AGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAG 136855 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || |||||||| | || || || || || |||||| | || | Sbjct 136856 GAATGCCTTCCTTGTCCTGAATCTTGGTCTTCACGTTGTCGATAGTATCAGATGACTCCA 136915 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 | || | || || ||||| || || | ||||| || Sbjct 136916 CCTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTGAC 136952 >seq2257 Length=132105 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || ||||||||||| | | | | |||||||| || || ||||| || ||||| Sbjct 93797 TTTTGGATATTATAATCGCTCAAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATC 93738 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTC 82741 | || ||| |||||||| || || || ||||| ||||||||| ||||| || ||||| || Sbjct 93737 AATCGTTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGAATC-TTGCTCTTCACATTGTC 93679 Query 82742 AATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || || || | | || || || | || || |||||||| || | |||||| || || Sbjct 93678 GATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGCGTCTTGACGAA 93619 Query 82802 --TATCTGCA 82809 ||| |||| Sbjct 93618 GCTATTTGCA 93609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981788517542425