Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2550 134 2e-26 seq2473 104 3e-17 seq3047 86.0 7e-12 >seq2550 Length=338734 Score = 134 bits (148), Expect = 2e-26 Identities = 359/544 (66%), Gaps = 6/544 (1%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| || | || ||| ||| || | || || || || | || ||||| ||||| Sbjct 315096 TGAGACCTATAATTTGATGTCCCAGAAATTTTTCACTCATGCTTCACCCACCCTTTTCAA 315037 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||| || ||| || || || ||| | || || || | | |||||||| || Sbjct 315036 CGCGGGAACGCCCCAGCCACAAATGGCTTCTTGTTTTCTTATCGATATGAAGGAAGATAG 314977 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||||||||| ||||| || |||||| ||||| | || |||||| | ||||| Sbjct 314976 CATCGACGGCATTTACGATACTCTCAAGACTTGTGCGCTGATTTCCAAGACAGCTGGTGG 314917 Query 53422 TATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 ||| ||| | || | ||| | |||| || | ||| | || || || || Sbjct 314916 TATTGGTCTTAACGTCCATCGTA--TCCGAGCCACTGGCTCCTATATTGCAGGCACAAAT 314859 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 ||| | ||||||| | ||||||||||| ||||| ||||| || || || ||||| Sbjct 314858 GGCTCTTCTAATGGAATTATACCTATGCTCCGTGTCTTTAACAATACCGCTCGATACGTT 314799 Query 53540 AACCAGGGTGGTGGGAAGC-GCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 | || ||||| || | || ||| | | ||||| |||||||| || || ||||| | Sbjct 314798 GATCAAGGTGGCAACAAACGGCCAGGCG-CCTTCGCAATCTACCTTGAACCTTGGCATTC 314740 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 ||| || | || ||||| || || || ||| || || | ||||| || | ||| Sbjct 314739 CGATATCTTTGAATTTCTGGATCTTCGCAAGAACCACGGAAAGGAAGAAGTGAGAGCCCG 314680 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGA 53718 ||| || || ||||| |||| || || | |||||| || || |||||| ||| Sbjct 314679 TGATCTCTTCCTTGCTCTTTGGACCCCAGATTTGTTCATGAAACGAGTTGAGAAGAACGG 314620 Query 53719 GGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGA 53778 || ||| | || | || ||||| ||| || || | | |||||| ||||| || Sbjct 314619 TGATTGGACCTTGTTCTGTCCGAATGAGGCGCCAGGGTTGGCTGATGTCTATGGTGACGA 314560 Query 53779 GTTT 53782 |||| Sbjct 314559 GTTT 314556 >seq2473 Length=337605 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||||||| |||||||| | ||| ||||||||||| || |||||||| | ||| || ||| Sbjct 140280 ATCAATTCGTTCGAAAAGGTAAGACCAGGCATAAGACCGCGCTTCTTTAGCCAGAAAATG 140221 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | | |||||| || |||||||| || || |||||| |||||||| | | ||| || Sbjct 140220 GAAGCGAAGGAGCCGCTGAAGAAAATTCCCTCGACAGCAGCAAAGGCAATCAAGCGCTGG 140161 Query 74904 GCGAA 74908 ||||| Sbjct 140160 GCGAA 140156 Score = 84.2 bits (92), Expect = 2e-11 Identities = 179/265 (68%), Gaps = 7/265 (3%) Strand=Plus/Minus Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTG 75065 || ||||||| | | ||||||| | || ||||| ||||| ||||| || ||| | Sbjct 139992 GGTTCCTTGATGTACGTGTCAATGAGGAGAGAGTATGTCTCGGAATGGATATTCTCCATC 139933 Query 75066 AACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAAT 75123 | |||| | |||| || | || ||||||| |||||| || || | |||| Sbjct 139932 ATGATCTGGAATCCGTAAAAGCAACGAGCCTCTGGAATCTGAACTTCAGCGCTGAATCTC 139873 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 || | | | |||||| |||||||||| || ||||||||||| || ||||| || Sbjct 139872 TC--GACAAGATTCTCATTGACGATGCCATCGGAGGCGGCGAAGAAGGCCAGGACGCGAG 139815 Query 75184 TGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCA 75240 ||| |||| ||| |||||||| | ||| | || ||| || | || || | || Sbjct 139814 AGATGAAGTAGCGTTCATCGTCGTTCAGTCGATGGTTCCAGTCATGGAGATCTTTGGACA 139755 Query 75241 AATCAATCTCCTCGACCGTCCAGAA 75265 |||| || || || | |||||||| Sbjct 139754 AATCGATTTCTTCAGCAGTCCAGAA 139730 >seq3047 Length=16115 Score = 86.0 bits (94), Expect = 7e-12 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 124712 CTCGTGGTTGAACAGAATGCCAGTACAC-GCAAACATCCCGTACGACTCGCGGTAGTTTT 124770 ||||||||||||||| ||||| | ||| | || || || || || |||||||| Sbjct 6236 CTCGTGGTTGAACAGGATGCC-GCTCACTCCGAAGATGCCATAGCTTTCACGGTAGTTCA 6294 Query 124771 TCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGG 124830 |||||||| | || ||||||||| |||||| ||||| || || |||||||| || | Sbjct 6295 CAGTCATCCAGTGGGCATAGAGCTTGGCCACGCCGTAGGGACTGCGCGGGTAGAAAGGCG 6354 Query 124831 TGTTTTC-ATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGA 124889 || |||| | || || | | ||| | | || |||||||| || || | ||||||| Sbjct 6355 TGCTTTCGACTTGCGGCACG-GCCTGCACCAGACCGAACATCTCGGACGTGCTCGCCTGA 6413 Query 124890 TAGAA 124894 || || Sbjct 6414 TAAAA 6418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194966385000